Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 937 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.8 bits (138), Expect = 1e-12
 Identities = 52/251 (20%), Positives = 99/251 (39%), Gaps = 3/251 (1%)

Query: 29  QKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYTM 88
           ++++E + + +   P + +A      A   LG+   A    E+A S+RP+D+ ++ +   
Sbjct: 237 ERAVEAYGQAIRRAPDSFEAHNNLAQALRDLGRRDEALVHAERAASLRPHDVTVLNTQAN 296

Query: 89  LLNSLELFKESVEILKNVSESDDKIIEI---LGDAYLKTGKFNEAILQYNNILERKPRYK 145
           +L  L    E+V IL+     D +  E    LG A L       A   +       P   
Sbjct: 297 ILRGLRRVDEAVAILERALACDGRSAETHSNLGLALLAAQDRQRAEEHFRKAAALAPDCV 356

Query: 146 EILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMY 205
           +I+      L+ +    E L + E  L   P D  +   +G  ++    YE     ++  
Sbjct: 357 DIIVNLACFLIHINAGKEVLGVLEPALARFPGDVGLLATLGLHYFQENAYEDCATVFETV 416

Query: 206 LNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYET 265
           L +         S G      G+  E+L L   + E   ++      +G ++ D  +  +
Sbjct: 417 LAKKPDHVEARASLGVVRWSQGRLVESLALAQSIREDFPEDIRTLFLLGCVHSDLMENAS 476

Query: 266 AIYYLELANER 276
           A+   +LA E+
Sbjct: 477 ALEVFDLAVEK 487



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 47/270 (17%), Positives = 104/270 (38%), Gaps = 15/270 (5%)

Query: 30  KSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKAL-----------SIRPN 78
           +++E   +         D W  +G A   LG+ + A+++++ A+           ++   
Sbjct: 166 EALEALERAKTCGDDGADWWNIRGVALAALGEGEAAREAFKNAILRDGAAPMAWTNLGNL 225

Query: 79  DLEIIKSYTMLLNSLELFKESVEILKNVSESDDKIIEILGDAYLKTGKFNEAILQYNNIL 138
           ++   +S   L  ++E + +++    +  E+ + + + L D     G+ +EA++      
Sbjct: 226 EIRAARSADALERAVEAYGQAIRRAPDSFEAHNNLAQALRD----LGRRDEALVHAERAA 281

Query: 139 ERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKA 198
             +P    +L  +   L GL++ DEA+ I E+ L       E   N+G A    +  ++A
Sbjct: 282 SLRPHDVTVLNTQANILRGLRRVDEAVAILERALACDGRSAETHSNLGLALLAAQDRQRA 341

Query: 199 IQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYY 258
            + +            + ++    L  +    E L +    L +   +      +GL Y+
Sbjct: 342 EEHFRKAAALAPDCVDIIVNLACFLIHINAGKEVLGVLEPALARFPGDVGLLATLGLHYF 401

Query: 259 DTEDYETAIYYLELANERNPLNPSILVKLG 288
               YE      E    + P +      LG
Sbjct: 402 QENAYEDCATVFETVLAKKPDHVEARASLG 431



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 38/198 (19%)

Query: 151 KGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGN----AFYTVKKYEKAIQFYDMYL 206
           +G AL  L + + A E ++  +         W N+GN    A  +    E+A++ Y   +
Sbjct: 188 RGVALAALGEGEAAREAFKNAILRDGAAPMAWTNLGNLEIRAARSADALERAVEAYGQAI 247

Query: 207 NEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETA 266
                 F    +   ALR LG+ +EAL                                 
Sbjct: 248 RRAPDSFEAHNNLAQALRDLGRRDEAL--------------------------------- 274

Query: 267 IYYLELANERNPLNPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILN 326
             + E A    P + ++L         LR  ++ +  +E+AL  D   A+     G  L 
Sbjct: 275 -VHAERAASLRPHDVTVLNTQANILRGLRRVDEAVAILERALACDGRSAETHSNLGLALL 333

Query: 327 LLERHYEAIDCYKKAISI 344
             +    A + ++KA ++
Sbjct: 334 AAQDRQRAEEHFRKAAAL 351



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 270 LELANERNPLNPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLE 329
           LE A +  P+N      LG  Y  L      +    +A+  +S   + W  +G    LL 
Sbjct: 104 LERAGDVAPMNAVFPRMLGAHYRALGQVGAAITAARRAVAVESADGENW--RGLAATLLG 161

Query: 330 -RHYEAIDCYKKAISINKNDSKFWMHLSNVYKTIGKEDYSKEAYENAV 376
               EA++  ++A +   + + +W         +G+ + ++EA++NA+
Sbjct: 162 GAPGEALEALERAKTCGDDGADWWNIRGVALAALGEGEAAREAFKNAI 209