Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis JJ

 Score = 69.3 bits (168), Expect = 8e-17
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 41/217 (18%)

Query: 152 GTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKG 211
           G  L   +K+ EALE Y+K+L   P D       G  F  +K+ EKA+Q ++  LN +  
Sbjct: 14  GALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKENEKALQCFNSVLNMNSS 73

Query: 212 DFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLE 271
                 +K     KL K                +NY  + ++G+  Y+  ++E A+ Y E
Sbjct: 74  YIPAIKNKKMVEEKLKKQEN-------------ENYNKFSKLGVENYNQGNFEKALGYFE 120

Query: 272 LANERNPLNPSILVKLGRTYVKLRNY------NKGLEFMEKALDKDSEYAKAWCYKGYIL 325
            A E NP + ++   + +T +KL+        NKG+E+                YK    
Sbjct: 121 KAFEINPYSETLRKNIEKTRIKLKEILPIRWNNKGVEY----------------YK---- 160

Query: 326 NLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTI 362
             ++ + +A +C++KA+++N N      + + V K I
Sbjct: 161 --VKNYQKAFECFEKAVTLNPNFESALKNKAMVQKLI 195



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 28/179 (15%)

Query: 24  NSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEII 83
           NS KY +++E ++K L+  P +  A + KG  +  L +++ A   +   L++  + +  I
Sbjct: 19  NSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKENEKALQCFNSVLNMNSSYIPAI 78

Query: 84  KSYTMLLNSLELFKESVEILKNVSESDDKIIEILGDAYLKTGKFNEAILQYNNILERKP- 142
           K+  M+   L+         K  +E+ +K  + LG      G F +A+  +    E  P 
Sbjct: 79  KNKKMVEEKLK---------KQENENYNKFSK-LGVENYNQGNFEKALGYFEKAFEINPY 128

Query: 143 -------------RYKEILA----KKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKN 184
                        + KEIL      KG     +K + +A E +EK + ++P      KN
Sbjct: 129 SETLRKNIEKTRIKLKEILPIRWNNKGVEYYKVKNYQKAFECFEKAVTLNPNFESALKN 187



 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 18/100 (18%)

Query: 8   KSKDPKKLLETGTEYYNSGKYQKSIEYFNKTLNSEP------KN------------PDAW 49
           ++++  K  + G E YN G ++K++ YF K     P      KN            P  W
Sbjct: 92  ENENYNKFSKLGVENYNQGNFEKALGYFEKAFEINPYSETLRKNIEKTRIKLKEILPIRW 151

Query: 50  YFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYTML 89
             KG  Y+ +   + A + +EKA+++ PN    +K+  M+
Sbjct: 152 NNKGVEYYKVKNYQKAFECFEKAVTLNPNFESALKNKAMV 191



 Score = 40.4 bits (93), Expect = 4e-08
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 28/173 (16%)

Query: 49  WYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSE 108
           W+  G       K   A + Y+K LS  P+D   +    M+   L+  +++++   +V  
Sbjct: 10  WHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKENEKALQCFNSVLN 69

Query: 109 SDDKIIEILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIY 168
            +   I  + +  +   K  +         +    Y +  +K G        F++AL  +
Sbjct: 70  MNSSYIPAIKNKKMVEEKLKK---------QENENYNKF-SKLGVENYNQGNFEKALGYF 119

Query: 169 EKVLKISPYDTEV------------------WKNIGNAFYTVKKYEKAIQFYD 203
           EK  +I+PY   +                  W N G  +Y VK Y+KA + ++
Sbjct: 120 EKAFEINPYSETLRKNIEKTRIKLKEILPIRWNNKGVEYYKVKNYQKAFECFE 172



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 310 KDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTIGKEDYSK 369
           K++   + W   G +L   E++ EA++CY K +S   +D         V+  + + + + 
Sbjct: 2   KNNYGIQKWHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKENEKAL 61

Query: 370 EAYENAVNLENHNMLP 385
           + + + +N+ N + +P
Sbjct: 62  QCFNSVLNM-NSSYIP 76