Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 415 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 87/391 (22%), Positives = 164/391 (41%), Gaps = 56/391 (14%)

Query: 14  KLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNP-DAWY---FKGNAYHMLGKS----KLA 65
           K ++   E Y++G+  ++I      L + PKN  D  Y     GN Y   GK     K  
Sbjct: 47  KKVQKSFEAYSNGQLDEAIAIL---LEANPKNDFDKAYVGRMLGNFYAEKGKMDTAIKYL 103

Query: 66  QDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEI----LKNVSESDDKIIEILGDAY 121
           + + E  +    +    ++ Y  LL   + FKE++      ++   ++D ++   +G AY
Sbjct: 104 KQAVEADILGGTDHAATLRLYADLLLQEKQFKEAIPYYYKWMEFTCKTDSQMYRRIGIAY 163

Query: 122 LKTGKFNEAILQYNNILE-RKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTE 180
            +  ++++ I   +  L   +   K +   K T+    KK+  A+ + E ++ + P D  
Sbjct: 164 SELKQWDKVIEVADKGLSLAESPDKGLYQMKLTSYFNQKKYKNAVGVLETMVPLFPDDGR 223

Query: 181 VWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVL 240
           +W  +   +  ++ Y+ A+  YD+       D G  +++   L +L     A     KV 
Sbjct: 224 LWVQLAQFYLMIEDYDNALATYDLAYRNGFLDTGANITR---LAQLMAQKGAPYQAAKVF 280

Query: 241 EKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLGRTYVKLRNYNKG 300
           EKH+++       GL+  D + YE                      L   Y   + + + 
Sbjct: 281 EKHMKS-------GLITQDVKSYEI---------------------LAGFYQNAKEFKEA 312

Query: 301 LEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISI---NKNDSKFWMHLSN 357
            E   KA    ++  K +  +G +L+L E++ EAI   +KAIS+   +  ++ F + L++
Sbjct: 313 AELYGKAAAISND-GKLYLKQGRLLSLEEKYSEAIPVLEKAISLGIEHPGEANFELALAH 371

Query: 358 VYKTIGKEDYSKEAYENAVNLENHNMLPKSA 388
               +  + Y K AY  AV         KSA
Sbjct: 372 ----LSLKQY-KSAYNRAVLAAKDKKTEKSA 397



 Score = 34.7 bits (78), Expect = 5e-06
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 16/206 (7%)

Query: 4   LSIFKSKDPKKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSK 63
           LS+ +S D        T Y+N  KY+ ++      +   P +   W      Y M+    
Sbjct: 180 LSLAESPDKGLYQMKLTSYFNQKKYKNAVGVLETMVPLFPDDGRLWVQLAQFYLMIEDYD 239

Query: 64  LAQDSYEKALSIRPNDLEIIKSYTML----------LNSLELFKESVEILKNVSESDDKI 113
            A  +Y+  L+ R   L+   + T L            + ++F++ ++    +   D K 
Sbjct: 240 NALATYD--LAYRNGFLDTGANITRLAQLMAQKGAPYQAAKVFEKHMK--SGLITQDVKS 295

Query: 114 IEILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLK 173
            EIL   Y    +F EA   Y          K +  K+G  L   +K+ EA+ + EK + 
Sbjct: 296 YEILAGFYQNAKEFKEAAELYGKAAAISNDGK-LYLKQGRLLSLEEKYSEAIPVLEKAIS 354

Query: 174 IS-PYDTEVWKNIGNAFYTVKKYEKA 198
           +   +  E    +  A  ++K+Y+ A
Sbjct: 355 LGIEHPGEANFELALAHLSLKQYKSA 380