Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 576 a.a., tetratricopeptide repeat family protein from Caulobacter crescentus NA1000

 Score = 57.8 bits (138), Expect = 8e-13
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 6/219 (2%)

Query: 28  YQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYT 87
           +Q +IE + +     P    A      A+  LG    A D    AL+  PND +   +  
Sbjct: 324 HQAAIEAYGRVPAGAPLYASAQSKIAWAWSALGDKTKALDVARAALTAAPNDRDAAVALA 383

Query: 88  MLLNSLELFKESVEIL-----KNVSESDDKIIEILGDAYLKTGKFNEAILQYNNILERKP 142
            LL +   + ESV +L     +     D +++ +   A  + G++ EA       L+  P
Sbjct: 384 DLLRASSRWDESVAVLDLLLAREAEAPDWRLLYMRAIALEQGGRWPEAEKDLQTALKVNP 443

Query: 143 RYKEILAKKGTALVGL-KKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQF 201
              ++L   G + +   ++  EAL + EK +   P    +  ++G A++ +  Y+ AI+ 
Sbjct: 444 DEPDLLNFLGYSWIDRNERLPEALAMVEKAVAARPQSGAMMDSLGWAYFRLGDYKTAIEK 503

Query: 202 YDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVL 240
            +  +    GD  +    GDA  K G+T EA   + +VL
Sbjct: 504 LEAAVELEPGDPDINGHLGDAYWKAGRTIEARFQWQRVL 542



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 24/77 (31%), Positives = 38/77 (49%)

Query: 19  GTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78
           G  Y+  G Y+ +IE     +  EP +PD     G+AY   G++  A+  +++ LS+ P 
Sbjct: 488 GWAYFRLGDYKTAIEKLEAAVELEPGDPDINGHLGDAYWKAGRTIEARFQWQRVLSLEPT 547

Query: 79  DLEIIKSYTMLLNSLEL 95
           D +   S   L N L L
Sbjct: 548 DKQKADSEDKLKNGLGL 564



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 26  GKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSY---EKALSIRPNDLEI 82
           G++ ++ +     L   P  PD   F G  Y  + +++   ++    EKA++ RP    +
Sbjct: 426 GRWPEAEKDLQTALKVNPDEPDLLNFLG--YSWIDRNERLPEALAMVEKAVAARPQSGAM 483

Query: 83  IKSYTMLLNSLELFKESVEILKNVSE---SDDKIIEILGDAYLKTGKFNEAILQYNNILE 139
           + S       L  +K ++E L+   E    D  I   LGDAY K G+  EA  Q+  +L 
Sbjct: 484 MDSLGWAYFRLGDYKTAIEKLEAAVELEPGDPDINGHLGDAYWKAGRTIEARFQWQRVLS 543

Query: 140 RKPRYKE 146
            +P  K+
Sbjct: 544 LEPTDKQ 550



 Score = 38.1 bits (87), Expect = 6e-07
 Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 13/202 (6%)

Query: 116 ILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKIS 175
           ++GD   +      AI  Y  +    P Y    +K   A   L    +AL++    L  +
Sbjct: 313 LVGDLLNQGDDHQAAIEAYGRVPAGAPLYASAQSKIAWAWSALGDKTKALDVARAALTAA 372

Query: 176 PYDTEVWKNIGNAFYTVKKYEKAIQFYDMYL--NEHKGDFGVTLSKGDALRKLGKTNEA- 232
           P D +    + +      ++++++   D+ L       D+ +   +  AL + G+  EA 
Sbjct: 373 PNDRDAAVALADLLRASSRWDESVAVLDLLLAREAEAPDWRLLYMRAIALEQGGRWPEAE 432

Query: 233 LDLYTKVL----EKHIQNYEPWCRVGLLYYD-TEDYETAIYYLELANERNPLNPSILVKL 287
            DL T +     E  + N+     +G  + D  E    A+  +E A    P + +++  L
Sbjct: 433 KDLQTALKVNPDEPDLLNF-----LGYSWIDRNERLPEALAMVEKAVAARPQSGAMMDSL 487

Query: 288 GRTYVKLRNYNKGLEFMEKALD 309
           G  Y +L +Y   +E +E A++
Sbjct: 488 GWAYFRLGDYKTAIEKLEAAVE 509



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 50/284 (17%), Positives = 108/284 (38%), Gaps = 38/284 (13%)

Query: 15  LLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALS 74
           L+     +    + Q ++ Y    L  +P   +AW   G+  +     + A ++Y +  +
Sbjct: 277 LIACAATFAGERQNQFALAYLRLALRLDPGRDEAWILVGDLLNQGDDHQAAIEAYGRVPA 336

Query: 75  IRPNDLEIIKSYTMLLNSLELFKESVEILK---NVSESDDKIIEILGDAYLKTGKFNEAI 131
             P             ++L    +++++ +     + +D      L D    + +++E++
Sbjct: 337 GAPLYASAQSKIAWAWSALGDKTKALDVARAALTAAPNDRDAAVALADLLRASSRWDESV 396

Query: 132 LQYNNILERKPRYKE--ILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAF 189
              + +L R+    +  +L  +  AL    ++ EA +  +  LK++P + ++   +G ++
Sbjct: 397 AVLDLLLAREAEAPDWRLLYMRAIALEQGGRWPEAEKDLQTALKVNPDEPDLLNFLGYSW 456

Query: 190 YTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEP 249
                                            + +  +  EAL +  K +    Q+   
Sbjct: 457 ---------------------------------IDRNERLPEALAMVEKAVAARPQSGAM 483

Query: 250 WCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLGRTYVK 293
              +G  Y+   DY+TAI  LE A E  P +P I   LG  Y K
Sbjct: 484 MDSLGWAYFRLGDYKTAIEKLEAAVELEPGDPDINGHLGDAYWK 527



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 50/269 (18%)

Query: 110 DDKIIEILGDA-----YLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEA 164
           +DK+++  G       + +  +++EA   Y  +              G  L   K++D+A
Sbjct: 174 NDKLVQYFGQQGQARLFERAKRYDEAETDYKALTSNAATASIFTLDYGAFLERRKRYDDA 233

Query: 165 LEIYEKVLKISPYDTEVWKNIGNAFY--------TVKK--YEKAIQFYDMYLNEHKGDFG 214
           L +Y+  L+ +P DT + +    A          T+++   E  I     +  E +  F 
Sbjct: 234 LALYDAALRAAPNDTGLLRARARAAARSAPPSAPTLRQGAAEGLIACAATFAGERQNQFA 293

Query: 215 VTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELAN 274
           +       LR   + +   D             E W  VG L    +D++ AI       
Sbjct: 294 LAY-----LRLALRLDPGRD-------------EAWILVGDLLNQGDDHQAAIEAYGRVP 335

Query: 275 ERNPLNPSILVKLGRTYVKLRNYNKGLEFMEKAL-----DKDSEYAKA--------WCYK 321
              PL  S   K+   +  L +  K L+    AL     D+D+  A A        W   
Sbjct: 336 AGAPLYASAQSKIAWAWSALGDKTKALDVARAALTAAPNDRDAAVALADLLRASSRWDES 395

Query: 322 GYILN-LLERHYEAID---CYKKAISINK 346
             +L+ LL R  EA D    Y +AI++ +
Sbjct: 396 VAVLDLLLAREAEAPDWRLLYMRAIALEQ 424