Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 415 a.a., TPR repeat-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 117 LGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTAL---VGLKKFDEALEIYEKVLK 173
           LG AY+   +F++A+  ++ ++E   ++ E++  K TA+    G +   +   + ++ L 
Sbjct: 168 LGHAYISANQFDKAVAAFDKVMELVGKHAELIGPKATAMYYKAGQQMTPQIQALIDESLA 227

Query: 174 ISPYDTEVWKNIG-NAFYTVKKYEKAIQFYDMYLNEHKGD 212
           + P D      +G +AF+T   Y+KAI  +   LN  + D
Sbjct: 228 LDPQDPSTLLLVGMDAFFTA-NYQKAIDSWQTILNSDRTD 266



 Score = 31.6 bits (70), Expect = 4e-05
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 32  IEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEII--KSYTML 89
           ++     + +EP+N  AW+  G+AY    +   A  +++K + +     E+I  K+  M 
Sbjct: 148 VQMMEAQVQAEPENSQAWFSLGHAYISANQFDKAVAAFDKVMELVGKHAELIGPKATAMY 207

Query: 90  LNSLELFKESVEILKNVS----ESDDKIIEILGDAYLKTGKFNEAILQYNNIL 138
             + +     ++ L + S      D   + ++G     T  + +AI  +  IL
Sbjct: 208 YKAGQQMTPQIQALIDESLALDPQDPSTLLLVGMDAFFTANYQKAIDSWQTIL 260



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 8/41 (19%), Positives = 27/41 (65%)

Query: 163 EALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYD 203
           + +++ E  ++  P +++ W ++G+A+ +  +++KA+  +D
Sbjct: 146 QRVQMMEAQVQAEPENSQAWFSLGHAYISANQFDKAVAAFD 186



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 10  KDPKKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPD 47
           +DP  LL  G + + +  YQK+I+ +   LNS+  + D
Sbjct: 231 QDPSTLLLVGMDAFFTANYQKAIDSWQTILNSDRTDVD 268