Pairwise Alignments

Query, 339 a.a., homoisocitrate dehydrogenase from Methanococcus maripaludis S2

Subject, 364 a.a., 3-isopropylmalate dehydrogenase (RefSeq) from Shewanella loihica PV-4

 Score =  180 bits (456), Expect = 6e-50
 Identities = 128/338 (37%), Positives = 183/338 (54%), Gaps = 31/338 (9%)

Query: 6   KICVINGDGIGNEVVPETVRVLNELG-----DFEFIHAHAGYECFKRCGDAIPENTIEIA 60
           ++ V+ GDGIG EV+ E  +VL  +      D E+     G       G  +PE+T++  
Sbjct: 4   QVAVLAGDGIGPEVMAEARKVLKAVEERFSLDIEYSEYDVGGAAIDHHGCPLPESTLKGC 63

Query: 61  KESDCILFGSVTTPKPTEL--KNKSYRSPILTLRKELDLYANIRPT-------------- 104
           +E+D ILFGSV  PK   L   ++  R  +L LR   +L+ N+RP               
Sbjct: 64  EEADAILFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHVGLEHMSPLRS 123

Query: 105 -YNFDNLDFVIIRENTEGLYVKK---EYYDEKNEVAIAERIISKFGSSRIVKFAFDYAVQ 160
             +    D + +RE T G+Y  K      + + E A      S+    RI K AF+ A +
Sbjct: 124 DISAQGFDVLCVRELTGGIYFGKPKGRQGEGEQEEAFDTMRYSRREVRRIAKIAFE-AAR 182

Query: 161 NNRKKVSCIHKANVLRVTDGLFLEVFEEMSKHYEKLGIKSDDYLIDATAMYLIRNPQMFD 220
             RKKV+ + KANVL  +  L+ EV EE++K +  + +  +   ID   M L+R P  FD
Sbjct: 183 GRRKKVTSVDKANVLACSV-LWREVVEEVAKEFPDVAL--EHIYIDNATMQLLRRPFDFD 239

Query: 221 VLVTTNLFGDILSDEAAGLIGGLGMSPSANIG-DKNGLFEPVHGSAPDIAGKGISNPIAT 279
           V++ +NLFGDI+SDE A L G +G+  S ++  D  GL+EP  GSAPDIAG+GI+NPIA 
Sbjct: 240 VMLCSNLFGDIISDEIAMLTGSMGLLSSVSLNSDGFGLYEPAGGSAPDIAGQGIANPIAQ 299

Query: 280 ILSAAMMLDH-LKMNKEAEYIRKAVKKTVECKYLTPDL 316
           ILSAA++L H LK    A+ I  AV K +   YLT +L
Sbjct: 300 ILSAALLLRHSLKEEAAAKAIEDAVAKALSDGYLTGEL 337