Pairwise Alignments

Query, 339 a.a., homoisocitrate dehydrogenase from Methanococcus maripaludis S2

Subject, 353 a.a., 3-isopropylmalate dehydrogenase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  202 bits (513), Expect = 1e-56
 Identities = 125/354 (35%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 6   KICVINGDGIGNEVVPETVRVLNELGD-----FEFIHAHAGYECFKRCGDAIPENTIEIA 60
           KI V+ GDGIG E+  + V V++ + +       + +A  G +   + GD  PE T E+ 
Sbjct: 4   KIAVLAGDGIGPEISVQGVDVMSAVCEKFGHKVSYEYAICGADAIDKVGDPFPEETYEVC 63

Query: 61  KESDCILFGSVTTPKPTELKNKSYRSP--ILTLRKELDLYANIRPTYNF----------- 107
           K +D +LF +V  PK         R    +L +RK+L L+ANIRP   F           
Sbjct: 64  KNADAVLFSAVGDPKFDNDPTAKVRPEQGLLAMRKKLGLFANIRPVQTFKCLIHKSPLRA 123

Query: 108 ---DNLDFVIIRENTEGLYVKKEYYDEKNEVAIAERIISKFGSSRIVKFAFDYAVQNNRK 164
              +N DF+ IRE T G+Y  ++Y D  N+ A      ++    RI+K AF+YA++  RK
Sbjct: 124 ELVENADFICIRELTGGMYFGEKYQD--NDKAYDTNYYTRPEIERILKVAFEYAMKR-RK 180

Query: 165 KVSCIHKANVLRVTDGLFLEVFEEMSKHYEKLGIKSDDYLIDATAMYLIRNPQMFDVLVT 224
            ++ + KANVL  +  L+ ++ +EM+ +Y +  + +D   +D  AM +I+ P  FDV+VT
Sbjct: 181 HLTVVDKANVL-ASSRLWRQIAQEMAPNYPE--VTTDYMFVDNAAMKMIQEPAFFDVMVT 237

Query: 225 TNLFGDILSDEAAGLIGGLGMSPSANIGDKNGLFEPVHGSAPDIAGKGISNPIATILSAA 284
            N FGDIL+DE + + G +G+ PSA+ G+   +FEP+HGS P   G  I+NP+A ILS A
Sbjct: 238 ENTFGDILTDEGSVISGSMGLLPSASTGESTPVFEPIHGSWPQAKGLNIANPLAQILSVA 297

Query: 285 MMLDHLKMNKEAEYIRKAVKKTVECKYLTPDL----GGNLKTFEVTEKIIESIR 334
           M+ ++    +E   IRKAV  +++    TP++    G    T EV + I++ I+
Sbjct: 298 MLFEYFDCKEEGALIRKAVDASLDENVRTPEIQVADGAKYGTKEVGQWIVDYIK 351