Pairwise Alignments

Query, 533 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 538 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  406 bits (1044), Expect = e-118
 Identities = 228/551 (41%), Positives = 349/551 (63%), Gaps = 31/551 (5%)

Query: 1   MAISIKKIVSIGLGGLMLGSTFCSGAFAVEKVGDVDSFVSDIVSGNNSNIDIIVGSNSVA 60
           MA+S+KKI +I +GG M+ S   +GAFA EKVGDVD+F +D+V+  N+N+DI+VGSN+ A
Sbjct: 1   MAMSMKKIGAIAVGGAMVASALATGAFAAEKVGDVDAFAADVVADGNANVDIVVGSNAAA 60

Query: 61  SDVVSAANIAAKIGSLSFLEQNGKSAAATLSIASKSKSEEFNLIGS------GVTDSLFA 114
            DVVSAANIAAKIGSL F E   +  AAT+S+ ++++S++  +  +      G   + F 
Sbjct: 61  LDVVSAANIAAKIGSLMFTEGTVEDGAATVSVKAEAESDDEQVYDADDEANVGTFPATFV 120

Query: 115 VSADDDYLSIITNADFHSSTNLDATGYVSLEDLGNLMEISDTDPSSWFTGSDNDVSAEFL 174
            SAD DY  +  ++ F        T YVSL  L  L+EI D DPS W++  + D +AE +
Sbjct: 121 TSADKDYNELFNDSSFV------ITNYVSLGKLDTLVEIDDIDPSEWYS-DEEDNAAELV 173

Query: 175 FLRLKSDAT--NWKVNSDEMSYMALLLDENLGVPGGLKCMSPGRNIVYLGEEWTLMGMNA 232
           +  + S +    + +N  +++Y++ + ++   +  G   + PG  I +LGEE+ L+ +++
Sbjct: 174 YATVSSTSKVGEFDINDSDVAYISAVTNDT--IEDGFVKLQPGMRIPFLGEEYVLVKVDS 231

Query: 233 DADKVSMGKEVYRGTLKEGKSYFV-NGYEIKIDSIITD---STNYKVSAKILKDGTVVKS 288
           D D V +GKEV+ G +KEG+SY + NGY +K+DS+++    +   KV+ KILKDG  V  
Sbjct: 232 DDDFVVIGKEVFDGVIKEGESYDLGNGYTVKVDSVLSPLGTTEEPKVNVKILKDGKTVAE 291

Query: 289 AYDTAPLNLISNGIGIRFQKVYESIDSNAAYADVVIVNSVKGMELGSEVIPDYEIYSVLY 348
            +DT  + ++   IG+     +E++ S+  YA++VIV++V   +LG E +PD+E+Y +  
Sbjct: 292 KFDTTQIKMVYGDIGVVVNSAWENVGSDYGYAELVIVDNVVKADLGEEFLPDWELY-LFN 350

Query: 349 TGGTFRYTDDFLKGQKNM------GLALKYVGDDLTGLGSDDTVEIANYANFLFDDEGKS 402
           +  T    DD  +   +       GLALKYVGDD  GL   D  +IA+Y  F  +D+   
Sbjct: 351 SDATITDIDDIFEDDASKSGLVVSGLALKYVGDDEEGLEGGDDFDIADYVTFDLEDDDDD 410

Query: 403 ATTLSVFFEMNEEKEVSIIQNQKAKVLNVEVIADKISAESEQSTILNAPVVKLDTETSME 462
               +V F+M++ KEVS+   Q   VLN E+   +I AE++++ ++ AP+  LD+E S++
Sbjct: 411 T---NVLFKMDQAKEVSLAIGQSVNVLNAEIKLAEIDAEAKEAVVMTAPIAVLDSEASLD 467

Query: 463 SSENPLILVGGPVVNSITEELVNAGLFAIDDDSLATLAVVSETANGNDVLIVTGGDRDAT 522
           +++  LILVGGPVVN++T EL +AGL AID++S ATLAV +  ANGNDVL+V GGDR AT
Sbjct: 468 AADKGLILVGGPVVNALTAELADAGLVAIDNESPATLAVAAGAANGNDVLVVAGGDRAAT 527

Query: 523 AEAANALIAMI 533
            EAA ALI M+
Sbjct: 528 EEAAEALIDML 538