Pairwise Alignments

Query, 533 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 528 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  242 bits (617), Expect = 3e-68
 Identities = 160/552 (28%), Positives = 290/552 (52%), Gaps = 51/552 (9%)

Query: 5   IKKIVSIGLGGLMLGSTFCSGAFAVEKVGDVDSFVSD-IVSGNNSNIDIIVGSNSVASDV 63
           +KKI  I +G  +L ++  + A+A+EK G+++ F+ D ++   N  + I+VG N+ A DV
Sbjct: 5   LKKIGCILVGSTVLSASI-TAAYALEKYGNINDFIDDDLIKNGNPEVYIVVGENAAALDV 63

Query: 64  VSAANIAAKIGSLSFLEQNGKSAAATLSIASKSKSEEFNLI-GSGVTDS-------LFAV 115
            SA  I+AKIG+L++ E   +  + T+      +SE  +L+ G+   DS       +   
Sbjct: 64  TSANKISAKIGTLTYSETIIEDES-TVEYQIIGESESIDLLDGTDKLDSAGTEKSWILVT 122

Query: 116 SADDDYLSIITNAD---FHSSTNLDATGYVSLEDLGNLMEISDTDPSSWFTGSDNDVSAE 172
           SADDDY     + +   F  S   +A    SL + G L+E+ D DP + F   D+  +AE
Sbjct: 123 SADDDYADHFDDDEGNSFSYSGFSEADQTKSLGNFGYLLEVGDIDPENHFESDDD--AAE 180

Query: 173 FLFLRL-----KSDATNWKVNSDEMSYMALLLDENLGVPGGLKCMSPGRNIVYLGEEWTL 227
            +F+R+      + + N+ +  D M Y +++    +      K +  G  I +LG+++ +
Sbjct: 181 IVFVRITDSNKNAGSQNYDIGKD-MVYASIVYPNQVSAFKLTKDLKEGYEIPFLGKKYRI 239

Query: 228 MGMNADADKVSMGKEVYRGTLKEGKSYFVNGYEIKIDSIITDSTNYKVSAKILKDGTVVK 287
           + +N D + + +G   Y GTL++G       Y+I +  I+     Y V   IL++G +++
Sbjct: 240 VQINEDDNIIYLGTASYDGTLEQGNYISSGDYQIVLGEILESGDEYSVEISILRNGNIIE 299

Query: 288 SAYDTA----PLNLISNGIGIRFQKVYESIDSNAAYADVVIVNSVKGMELGSEVIPDYEI 343
              +        ++I+  +G+    V+ +  ++  YAD+ I  S+  +ELG E + ++E+
Sbjct: 300 EHTEILRSDKSFSVIAGDLGVTVHDVWTNAAADTGYADITICRSLTELELGEEYVNNWEV 359

Query: 344 YSVLYTGGTFRYTDDFLKGQKN--MGLALKYVGDDLTGLGSDDTVEIANYANFLFDDEGK 401
            +V  TGGT     DFLK  ++  +G+AL Y G D+ G+   D ++IA+Y N +FDDE  
Sbjct: 360 RAVTNTGGTI----DFLKTYEDNTVGIALVYAGSDIEGINDGDRIKIADYVNLVFDDE-- 413

Query: 402 SATTLSVFFEMNEEKEVSIIQNQKAKVLNVEVIADKISAESEQSTILNAPVVKLDTETSM 461
                       ++ +  + + +  + +        + ++S +      P + +D E  +
Sbjct: 414 ------------DDLDKMVAEFKAERTVTTGSTGGTVISKSGE-----VPKIIMDDEIKL 456

Query: 462 ESSENPLILVGGPVVNSITEELVNAGLFAIDDDSLATLAVVSETANGNDVLIVTGGDRDA 521
           + ++  LIL+GGPV N +T+EL N G   ID++S AT +++   ANGN+VL++ GGDR +
Sbjct: 457 DEADKNLILIGGPVANKLTKELQNEGKIYIDNESPATASLIEGAANGNNVLVIAGGDRYS 516

Query: 522 TAEAANALIAMI 533
           T  A  +LI +I
Sbjct: 517 TESAVLSLINLI 528