Pairwise Alignments

Query, 533 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 548 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  591 bits (1523), Expect = e-173
 Identities = 317/551 (57%), Positives = 395/551 (71%), Gaps = 21/551 (3%)

Query: 1   MAISIKKIVSIGLGGLMLGSTFCSGAFAVEKVGDVDSFVSDIVSGNNSNIDIIVGSNSVA 60
           MAISIKKIVSIGLGGLMLG+T  S AFAVE+VGDVDSFVSDIVSGNNSNIDIIVGSNSVA
Sbjct: 1   MAISIKKIVSIGLGGLMLGTTLSSSAFAVEQVGDVDSFVSDIVSGNNSNIDIIVGSNSVA 60

Query: 61  SDVVSAANIAAKIGSLSFLEQNGKSAAATLSIASKSKSEEFNLIGSGVTDS--------- 111
           SDVVSAANIAAKIGSLSFLEQ+ +SA+ATLS+++ + S++F+L+     D          
Sbjct: 61  SDVVSAANIAAKIGSLSFLEQHDESASATLSVSASASSDDFDLLNDDAADDSINFTSNGN 120

Query: 112 -LFAVSADDDYLSIITNADFHSSTNLDA-TGYVSLEDLGNLMEISDTDPSSWFTGSDNDV 169
            LF   ADDDY  ++ +  +  ST LDA  G  SL  L  L  + D DPS WF   D+  
Sbjct: 121 GLFIACADDDYADVLADITYDDSTGLDADNGAKSLGKLSTLSSVDDIDPSDWFNSDDD-- 178

Query: 170 SAEFLFLRLKSDATNWKVNSDEMSYMALLLDENLGVPGGLKCMSPGRNIVYLGEEWTLMG 229
           + EFLF +L +D+  W +N + ++Y  +   ++      +  + PG+ I ++GEEW ++G
Sbjct: 179 AYEFLFAKLNNDSGEWNINEEGLAYAVISFKDDASSFDDITTLCPGKRIPFMGEEWVIIG 238

Query: 230 MNADADKVSMGKEVYRGTLKEGKSYFV-NGYEIKIDSIIT---DSTNYKVSAKILKDGTV 285
           M+AD D  ++GKEVY G +KEG+SY + NGYE+KI +II    D    KV+A++LKDG V
Sbjct: 239 MSADKDSFALGKEVYDGVIKEGESYTLGNGYEVKILNIIQSLDDENECKVNAQLLKDGKV 298

Query: 286 VKSAYDTAPLNLISNGIGIRFQKVYESIDSNAAYADVVIVNSVKGMELGSEVIPDYEIYS 345
           +   +D   LN+ SNGIG+R    +++I S+  YA++VIVN++K + LG E IPD+E Y 
Sbjct: 299 ITEVFDNPRLNMCSNGIGVRINSAWQNIGSDYGYAELVIVNNMKCLSLGEEYIPDWETYG 358

Query: 346 VLYTGGTFRYTDDFLK---GQKNMGLALKYVGDDLTGLGSDDTVEIANYANFLFDDEGKS 402
           +L    T  YTDDF     GQK +GLALKYVGDDL  +GS D + IANY  F  DDE + 
Sbjct: 359 ILKGNNTLEYTDDFKSFEYGQKKVGLALKYVGDDLEDIGSGDEITIANYGTFTLDDEDED 418

Query: 403 ATTLSVFFEMNEEKEVSIIQNQKAKVLNVEVIADKISAESEQSTILNAPVVKLDTETSME 462
              LSVFFEMNEEKEVSI++NQK  VLN E++AD I A  E+S  +NAPVVKLDTETSME
Sbjct: 419 -DKLSVFFEMNEEKEVSIVKNQKVNVLNAEIVADAIFAGDEESLTVNAPVVKLDTETSME 477

Query: 463 SSENPLILVGGPVVNSITEELVNAGLFAIDDDSLATLAVVSETANGNDVLIVTGGDRDAT 522
           SSENPLILVGGP VNSIT+EL +  L AI+DDSLATL+VVSETANGNDVL+V GGDR AT
Sbjct: 478 SSENPLILVGGPFVNSITKELADTRLIAINDDSLATLSVVSETANGNDVLVVAGGDRIAT 537

Query: 523 AEAANALIAMI 533
            EAANALIAMI
Sbjct: 538 TEAANALIAMI 548