Pairwise Alignments

Query, 567 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 347 a.a., Tfp pilus assembly protein PilF from Pseudomonas stutzeri RCH2

 Score = 48.5 bits (114), Expect = 4e-10
 Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 402 EIDNNEFLEILSFANTLYESGDFEAAKTEYKKAIALNPGNSEVHNHYGCLLEYLEKYGEA 461
           +I+    L   S   + Y +G ++ A+  +++A+  N   + +  +YG LL    +Y EA
Sbjct: 201 KIEPRSLLAQNSLGYSYYLAGRWQDAERTFRRALDQNGSYTPLWRNYGLLLARTARYEEA 260

Query: 462 EIEFKKAVALDGSNSKAYNNLATFLAKSEKYDEAEEHYKKAIEIAPDYWAAIYNLAAMYA 521
              F++     GS ++A N++        K DEAE+ ++ A+E +P ++   +       
Sbjct: 261 LSAFEQI----GSRAQASNDVGYVCLVEGKLDEAEQFFRSALEQSPSHYLTAWENLERVR 316

Query: 522 ALKR---------YDEAVAQVKSMVKIF 540
            L++           + VA V + VK+F
Sbjct: 317 QLRKIRQLGLERAQSDVVAVVDAEVKVF 344



 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 310 LEISSLEPEFEEKSIF--KLEKETEQPELEENLEPVLEVPEELVEDVEILDASEE----D 363
           L    LEP+ ++  ++  ++ +E    +L E     L   E L +  + LDA  E     
Sbjct: 73  LRAMELEPKRQDALVWVGRIHRERGNDQLAE-----LAFTEVLAKQPDNLDALTEMGMLS 127

Query: 364 IEKELENQEVIIEEKLETLDELLDKSELESELVEEHTYEIDNNEFLEILSFANTLYESGD 423
           + +  +++   +  K  +LD+      +   L E     +D    L + +    L +  +
Sbjct: 128 LSQRDQDRARGLLHKAVSLDQRRQGVAIGETLPEPQALNVDQQSPLRLYNALGVLADLNN 187

Query: 424 -FEAAKTEYKKAIALNPGNSEVHNHYGCLLEYLEKYGEAEIEFKKAVALDGSNSKAYNNL 482
            F  ++  Y+ A+ + P +    N  G       ++ +AE  F++A+  +GS +  + N 
Sbjct: 188 RFALSEGYYQLALKIEPRSLLAQNSLGYSYYLAGRWQDAERTFRRALDQNGSYTPLWRNY 247

Query: 483 ATFLAKSEKYDEA 495
              LA++ +Y+EA
Sbjct: 248 GLLLARTARYEEA 260



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 44/88 (50%)

Query: 444 VHNHYGCLLEYLEKYGEAEIEFKKAVALDGSNSKAYNNLATFLAKSEKYDEAEEHYKKAI 503
           ++N  G L +   ++  +E  ++ A+ ++  +  A N+L      + ++ +AE  +++A+
Sbjct: 175 LYNALGVLADLNNRFALSEGYYQLALKIEPRSLLAQNSLGYSYYLAGRWQDAERTFRRAL 234

Query: 504 EIAPDYWAAIYNLAAMYAALKRYDEAVA 531
           +    Y     N   + A   RY+EA++
Sbjct: 235 DQNGSYTPLWRNYGLLLARTARYEEALS 262



 Score = 27.7 bits (60), Expect = 8e-04
 Identities = 19/96 (19%), Positives = 35/96 (36%)

Query: 410 EILSFANTLYESGDFEAAKTEYKKAIALNPGNSEVHNHYGCLLEYLEKYGEAEIEFKKAV 469
           + +  A   Y +GD + +  +Y +A+ L P   +     G +         AE+ F + +
Sbjct: 51  QAMQLAALAYRAGDLDQSLFQYLRAMELEPKRQDALVWVGRIHRERGNDQLAELAFTEVL 110

Query: 470 ALDGSNSKAYNNLATFLAKSEKYDEAEEHYKKAIEI 505
           A    N  A   +          D A     KA+ +
Sbjct: 111 AKQPDNLDALTEMGMLSLSQRDQDRARGLLHKAVSL 146