Pairwise Alignments

Query, 567 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 368 LENQEVIIEEKLETLDELLDKSELESELVEEHTYEIDNNEFLEILSFANTLYESGDFEAA 427
           L N   I+ E+L    E L       E+  +    ++N         A  L   G    A
Sbjct: 32  LWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNR--------AIVLEHLGRLPEA 83

Query: 428 KTEYKKAIALNPGNSEVHNHYGCLLEYLEKYGEAEIEFKKAVALDGSNSKAYNNLATFLA 487
              Y++A+A++    EV N+ G +L  L +  +A   +++A+AL    ++A+ N    L 
Sbjct: 84  VESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALW 143

Query: 488 KSEKYDEAEEHYKKAIEIAPDYWAAIYNLAAMYAALKRYDEAV 530
           +  +Y EA  HY++++ I PD  +A   L  +Y ++ + D+A+
Sbjct: 144 QQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQAL 186



 Score = 52.0 bits (123), Expect = 4e-11
 Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 17/214 (7%)

Query: 325 FKLEKETEQPELEENLEPVLEVPEELVEDVEILDASEEDIEKELE--NQEVIIEEKLETL 382
           F+L  E     L  N   +LE      E +   + + E   +  E  N   I+ E L  L
Sbjct: 21  FRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRL 80

Query: 383 DELLDKSELESELVEEHTYEIDNNEFLEILSFANTLYESGDFEAAKTEYKKAIALNPGNS 442
            E ++  E ++  ++    E+ NN  +        L + G  E A   Y++AIAL    +
Sbjct: 81  PEAVESYE-QALAIDRQQPEVWNNRGI-------VLRKLGRLEDAIASYQQAIALAAHYA 132

Query: 443 EVHNHYGCLLEYLEKYGEAEIEFKKAVALDGSNSKAYNNLATFLAKSEKYDEAEEHYKKA 502
           +   + G  L    +Y EA   ++++VA+D   S A+  L       ++ D+A     +A
Sbjct: 133 QAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQA 192

Query: 503 IEIAPDY---WA----AIYNLAAMYAALKRYDEA 529
           I + P     W     A+YNL    AAL  Y+ A
Sbjct: 193 IALQPQQATAWTWRGHALYNLGQYAAALTSYENA 226



 Score = 51.6 bits (122), Expect = 5e-11
 Identities = 33/113 (29%), Positives = 53/113 (46%)

Query: 427 AKTEYKKAIALNPGNSEVHNHYGCLLEYLEKYGEAEIEFKKAVALDGSNSKAYNNLATFL 486
           A   Y  A+ + P   E  N+   +LE+L +  EA   +++A+A+D    + +NN    L
Sbjct: 49  ALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVL 108

Query: 487 AKSEKYDEAEEHYKKAIEIAPDYWAAIYNLAAMYAALKRYDEAVAQVKSMVKI 539
            K  + ++A   Y++AI +A  Y  A  N         RY EAV   +  V I
Sbjct: 109 RKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAI 161



 Score = 44.7 bits (104), Expect = 6e-09
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 425 EAAKTEYKKAIALNPGNSEVHNHYGCLLEYLEKYGEAEIEFKKAVALDGSNSKAYNNLAT 484
           EA    Y   +   P N  + N+ G LLE L ++ EA   +  A+ +     +A NN A 
Sbjct: 13  EALLAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAI 72

Query: 485 FLAKSEKYDEAEEHYKKAIEI---APDYW----AAIYNLAAMYAALKRYDEAVA 531
            L    +  EA E Y++A+ I    P+ W      +  L  +  A+  Y +A+A
Sbjct: 73  VLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIA 126



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 416 NTLYESGDFEAAKTEYKKAIALNPGNSEVHNHYGCLLEYLEKYGEAEIEFKKAVALDGSN 475
           + LY  G + AA T Y+ A  L      +    G  L  LE+Y EA   +  A  L    
Sbjct: 208 HALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALASY--AAILPQLT 265

Query: 476 SKAYNNLATF----LAKSEKYDEAEEHYKKAIEIAPDYWAAIYNLAAMYAALKRYDEAVA 531
            +A   +A +     A  + +  A   + +AI   PD   A YN AA++A L +   A+A
Sbjct: 266 GEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYNRAALHARLDQPVAAIA 325

Query: 532 QVKSMVKI 539
            ++  + +
Sbjct: 326 DLQQAIAL 333



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 21/72 (29%), Positives = 31/72 (43%)

Query: 475 NSKAYNNLATFLAKSEKYDEAEEHYKKAIEIAPDYWAAIYNLAAMYAALKRYDEAVAQVK 534
           N   +NN    L +  ++ EA   Y  A+EI P    A+ N A +   L R  EAV   +
Sbjct: 29  NCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYE 88

Query: 535 SMVKIFRSDGNI 546
             + I R    +
Sbjct: 89  QALAIDRQQPEV 100



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 416 NTLYESGDFEAAKTEYKKAIALNPGNS--EVHNHYGCLLEYLEKYGEAEIEFKKAVALDG 473
           +TL +   +E A   Y   +    G +  EV  + G +  YL+ +  A   F +A+A + 
Sbjct: 242 HTLAQLERYEEALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNP 301

Query: 474 SNSKAYNNLATFLAKSEKYDEAEEHYKKAIEIAPDYWAAI 513
             ++A+ N A   A+ ++   A    ++AI + PD + ++
Sbjct: 302 DLAEAWYNRAALHARLDQPVAAIADLQQAIALDPDTYRSL 341



 Score = 27.7 bits (60), Expect = 8e-04
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 142 NMGNIYFNFGKYAEAIRCYKKAVKIIPDFVDALHNFNSLSNMNLFDMGEEPKKPVLYKD- 200
           N G +     ++ EA+  Y  A++I P   +AL+N      + L  +G  P+    Y+  
Sbjct: 35  NRGILLERLNRWTEALASYNCALEITPQRQEALNN----RAIVLEHLGRLPEAVESYEQA 90

Query: 201 VTIDELVPDIFSN 213
           + ID   P++++N
Sbjct: 91  LAIDRQQPEVWNN 103



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 142 NMGNIYFNFGKYAEAIRCYKKAVKIIPD 169
           N G   +  G+Y EA+R Y+++V I PD
Sbjct: 137 NCGFALWQQGRYREAVRHYEQSVAIDPD 164