Pairwise Alignments

Query, 304 a.a., hydroxymethylbilane synthase from Methanococcus maripaludis S2

Subject, 310 a.a., porphobilinogen deaminase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (376), Expect = 8e-41
 Identities = 101/254 (39%), Positives = 139/254 (54%), Gaps = 8/254 (3%)

Query: 2   KLRIGTRGSTLAMVQTEYIAGLLNDLD--IETEIIIVKTTGDKDQNKKLADLG-IGVFTK 58
           ++RI TR S LAM Q E++   L  +   I  E++ + T GD   +  LA +G  G+F K
Sbjct: 5   RIRIATRKSPLAMWQAEFVKAELERIHPGIVVELLPMSTKGDVILDTPLAKVGGKGLFVK 64

Query: 59  ELDNKMLENEIDIAVHSLKDVPTLWSDELQITATPKRESPDDIIIWRKDCDFDIEHDELN 118
           EL+  MLE++ DIAVHS+KDVP  + + L +    +RE P D  +               
Sbjct: 65  ELEVAMLEDQADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNIYKSISELPLGAT 124

Query: 119 VGTSSIRRTSFLQFTNPNLTPKLLRGNVATRINKLRNGEYDTIVMAKAGLIRQGIDLSEF 178
           VGTSS+RR   L+ + P+L  K LRGNV TR+ KL NGEYD I++A AGLIR  + LSE 
Sbjct: 125 VGTSSLRRQCQLRASRPDLIIKDLRGNVGTRLAKLDNGEYDAIILAAAGLIR--LKLSER 182

Query: 179 NYKKL---DILPAPAQGVIGVASRKADAKINQILEKICDKKTYIEATAERWALKEYGGGC 235
               +   + LPA  QG +G+  R  D ++  +L  +   +T     AER       GGC
Sbjct: 183 IASFISAEESLPANGQGAVGIECRTNDERVKALLAPLEHLETRYRVIAERAMNTRLEGGC 242

Query: 236 QAPFGAFAIYDTEE 249
           Q P GAFA  D +E
Sbjct: 243 QVPIGAFAEIDGDE 256