Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 656 a.a., macrolide ABC transporter ATP-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  120 bits (302), Expect = 9e-32
 Identities = 94/406 (23%), Positives = 188/406 (46%), Gaps = 25/406 (6%)

Query: 3   ITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVIS 62
           + D V  A R +   + ++ LT++G+VIG+ ++V ++++G G +  + +++   G+N+I 
Sbjct: 265 LVDAVQAAWRVMWINRFRTALTLLGIVIGVASVVVMLAVGEGSKRQVMAQMGAFGSNIIY 324

Query: 63  VLPSQNFGGPAVSKNF-NDNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVIEP 121
           +  S     P  +K   ++ D++A+ ++  V+ ++        + + +  H   V   + 
Sbjct: 325 LNGSAPT--PRAAKGIISEYDLAALADLPEVQRIMPVNGAEASVRFGNLDHTSYVGGNDT 382

Query: 122 SKFTHVYSKTWGYEPYKGRWIEDSDKYSC----MIGYALATNSFDREID-IGDKITINDK 176
           +     +   + +   +G +  D+D+       +IG+ +         D IG  I I + 
Sbjct: 383 N-----FPAIFNWPVAEGSYFSDADERGAAAVAVIGHKVRQKLLKDVADPIGRYILIENM 437

Query: 177 KYKVIGILEE----TGNPRTENSVILSKDVGEELFEINNEYNMMIVSVRSGEDVNLVSEE 232
            ++V+G+L E    +G+   +N + +                 ++++ R    V    + 
Sbjct: 438 PFQVVGVLAEKGASSGDSDADNRIAVPYSAASVRLFGTRHPEYVVIAARDAGKVKEAEQA 497

Query: 233 I-KDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMHMS 291
           + +  L    G ++F +     + ++       L++ L  +A ISLLVG +G+ N M M+
Sbjct: 498 VSRTLLRLHDGKQDFELTNNAAMIQAEARTQGTLSLMLGAIAAISLLVGGIGVMNIMLMT 557

Query: 292 ILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAAISGY 351
           + ER ++IGI  A GA    IL  F+ EA  L + GG+ G  L +L+  A+         
Sbjct: 558 VRERTREIGIRMATGARQRDILRQFLTEAVMLSVVGGLAGIGLALLVGGALL-------L 610

Query: 352 GLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           G I     W  + G    + V G++ G+ PAR  A+L+PV  L  E
Sbjct: 611 GKIAVAFEWLAVFGAFGCALVTGVVFGFMPARKAARLDPVAALTSE 656