Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 414 a.a., multidrug ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 86/431 (19%), Positives = 188/431 (43%), Gaps = 70/431 (16%)

Query: 9   FAGRNITQKKTQ-------SFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTI--GAN 59
           F G   T+ K +       S  ++IG+ +G+LA++ ++S+  G Q  ++S I  +   A 
Sbjct: 8   FIGTRYTRAKRRNRFVSFISMTSMIGLALGVLAMIVVLSVMNGFQREMSSRILGMVPHAT 67

Query: 60  VISVLPSQNFGGPAVSKNFNDNDVSAVRNVRGVEEVVAAWFGSYELEYR--DQSHYGNVL 117
           ++ V P  ++  P  +    + +V+A      +E +++       ++    D +  G V 
Sbjct: 68  IVGVNPIDDWQ-PVAAAALKNPEVTAAVPFTEMEGMLSHKGSMQPIQISGIDPAQEGKVS 126

Query: 118 VIEPSKFTHVYSKTWGYEPYKGRWIEDSDKYSCMIGYALATNSFDREIDIGDKITI---- 173
           ++       V  +    +P          +Y  +IG   A       +++GDK+T+    
Sbjct: 127 IVAQHI---VQGRLDALKP---------GEYGVVIGEITARRF---RLNVGDKLTLIVPE 171

Query: 174 ----------NDKKYKVIGILEETGNPRTENSVILSKDVGEELFEINNEYNMMIVSVRSG 223
                       ++  V+G+ +         ++I   D  +      N+   + ++V+  
Sbjct: 172 VSTAPGGITPRMQRLNVVGVFKVGAELDGSMALIHLADAAQMQHWQPNQVQSVRLAVKDL 231

Query: 224 EDVNLVSEEIKDEL-EDSRGDE----NFSVLTAEQLAESINSIFEVLTIFLVGVAGISLL 278
                VS EI   L  D + D+      S+ +A ++ +++  +   L + +V VA  +++
Sbjct: 232 YAAPKVSGEIATGLGADYKADDWTHTQGSLFSAMKMEKTMIGL---LLLMIVAVAAFNII 288

Query: 279 VGAVGISNTMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGIL- 337
                   T+ M + ++  DI IL+ +GA    I++IF+V+   +G+ G ++G +LG++ 
Sbjct: 289 A-------TLIMVVNDKGADIAILRTIGATPRQIMAIFMVQGTVIGVVGTLIGGVLGVIA 341

Query: 338 ---IAKAIEYIAAISGYGLIRAWISW------ELIVGVLVF----SFVVGILSGYFPARS 384
              ++  + ++  +SG  +  + + +      EL  G +V      F++  L+  +PA  
Sbjct: 342 ALNVSALVGWLERVSGQHIFSSDVYFVSNLPSELQRGDVVLICSAGFILSFLATVYPAWR 401

Query: 385 GAKLNPVDTLR 395
            AK+ P   LR
Sbjct: 402 AAKIEPAQALR 412