Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 407 a.a., probable ABC transporter permease protein from Synechococcus elongatus PCC 7942

 Score =  145 bits (365), Expect = 3e-39
 Identities = 107/411 (26%), Positives = 196/411 (47%), Gaps = 30/411 (7%)

Query: 4   TDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISV 63
           ++ +S A + +   + +S LT++G++IG  ++++++ +G G Q   + +  ++G NV+ +
Sbjct: 6   SESLSMAVKTLRANRLRSALTMLGIIIGNASVITMVGVGQGAQRLASEQFESLGPNVLFI 65

Query: 64  LPSQNF---GGPAVSKNFNDNDVSAVRNVRGVEEVVAAWFGSYEL-EYRDQSHYGNVLVI 119
           +P       GG  + K     D  A+         VA    + +L  Y+ +S    V  +
Sbjct: 66  VPGNQDTRRGGLDIPKTLVLADAVAIATQVPTAGEVAPQVSTRQLVTYQGESSTTQVFGV 125

Query: 120 EPSKFTHVYSKTWGYEPYKGRWIEDSD----KYSCMIGYALATNSFDREIDIGDKITIND 175
            PS  T        +   +GR+  D D    +   ++G  LA   F  +  +G  I I  
Sbjct: 126 TPSFLT-----VRSFSVARGRFFSDLDLSRAEQVAVLGSDLAIKLFGVQNPVGASIRIKG 180

Query: 176 KKYKVIGILEETG----NPRTENSVILSKDVGEELFEINNEYNMMI----VSVRSGEDVN 227
             ++VIG++E  G    N + +   +    V   +    + Y + +    V+ +    ++
Sbjct: 181 ASFRVIGVMEPKGSFLGNNQDDAVYLPLTTVSSRILGTTSPYGIEVSFISVAAKDANSID 240

Query: 228 LVSEEIKDELEDSRG---DENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGI 284
               +I + L        +++F V + + +   + ++   LT+ L  +AGISLLVG +GI
Sbjct: 241 AAQFQITNLLRQRHRIIREDDFEVRSQKDVLTIVGTVTNGLTLMLSAIAGISLLVGGIGI 300

Query: 285 SNTMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEY 344
            N M +S+ ER ++IG+ KA+GA    IL+ F++EA  L L GG +GT LGI    AI  
Sbjct: 301 MNIMLVSVSERTQEIGLRKAIGATQKDILNQFMIEAVILALLGGAIGTGLGITGVTAIAL 360

Query: 345 IAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLR 395
           +        ++A +S   I   +  S  +G+  G  PAR  A+L+P+  LR
Sbjct: 361 LTP------LKAGVSPVAIAITVTISSGIGLFFGVVPARQAARLDPIVALR 405