Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 647 a.a., transmembrane ATP-binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  132 bits (331), Expect = 4e-35
 Identities = 101/405 (24%), Positives = 184/405 (45%), Gaps = 20/405 (4%)

Query: 3   ITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVIS 62
           +++ V  A R +     ++ LT++G+VIG+ ++V+++++G G QN +   I+++G++++ 
Sbjct: 253 VSEAVKMALRALRANLFRTILTLLGIVIGVGSVVAMLAIGTGAQNSVLDRISSMGSDLLV 312

Query: 63  VLPSQ-NFGGPAVSKNFN--DNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVI 119
           V PS  NF G A   N      D  A+  +  V   V     +  L  R    Y      
Sbjct: 313 VRPSMANFRGSAGGTNVTLVPADADAITELANVAFAVPEMTSTVTLR-RGNIDYQTTANG 371

Query: 120 EPSKFTHVYSKTWGYEPYKGRWIEDSDKYS--CMIGYALATNSFDREID-IGDKITINDK 176
              +FT   S   G   +  R   D + Y+   ++G  +    F    D IG  + +N  
Sbjct: 372 TVPQFTEAKSWKIGRGEFINR--NDMETYAPVAVLGETVVKTLFPEGSDPIGQYVLVNKI 429

Query: 177 KYKVIGILE----ETGNPRTENSVILSKDVGEELFEINNEYNMMIVSVRSGEDVNLVSEE 232
            ++VIG++       G    ++ V++    G            + V V+    ++L  E 
Sbjct: 430 PFQVIGVMSGMGASAGGNDQDDVVLVPLTTGSMRLFGQRNIRTITVKVQDASAIDLTQER 489

Query: 233 IKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMHMSI 292
           I+  L +    ++  +     + E+       +  FL  VA ISLLVG +G+ N M +S+
Sbjct: 490 IQALLNERHRKDDTQITNMSSVREAFTETSNTMKFFLGSVAAISLLVGGIGVMNIMLVSV 549

Query: 293 LERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAAISGYG 352
            ER ++IG+  A GA    IL  F+VEA  +   GG +G + G+    A +       +G
Sbjct: 550 SERTREIGVRMATGARERDILVQFIVEALVVSAIGGAIGVVAGLSTGYAAK------AFG 603

Query: 353 LIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           +  ++    + +     +F+ G+L GY PAR+ ++L P   L  +
Sbjct: 604 MPVSFTPGPVAL-AFACAFLTGLLFGYLPARNASRLQPAVALSAD 647