Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 650 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  127 bits (318), Expect = 1e-33
 Identities = 110/407 (27%), Positives = 185/407 (45%), Gaps = 29/407 (7%)

Query: 5   DVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVL 64
           + +  AGR++     ++ LT++GVVIG+ A+V+++++G G +  + + I ++G N++ V 
Sbjct: 259 EALKMAGRSLRANIFRTALTLLGVVIGVAAVVTMMAIGEGSKQDVLTRIQSMGTNLLLVR 318

Query: 65  PSQNFGGPAVSKNFND-----NDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVI 119
           P    G P +  +  D      D  AV  + G+  V      S     R+   Y     I
Sbjct: 319 P----GAPGIRPSGTDVSLTPTDAEAVAQLAGMAAVAPERMASGITVRREGIDYRTT--I 372

Query: 120 EPSKFTHVYSKTWGYEPYKGRWIEDSDKYS----CMIGYALATNSFDREID-IGDKITIN 174
             +   +  +K W      G + + +D  +     ++G  +A N F  E D +G    + 
Sbjct: 373 NGTWPAYAAAKDWPMA--WGSFFDATDLQASAPVAVLGQTVAKNLFPGEEDPVGSYFLVR 430

Query: 175 DKKYKVIGILEETG----NPRTENSVILSKDVGEELFEINNEYNMMIVSVRSGEDVNLVS 230
           +  + VIG+LE  G        ++ V++               + +   V     ++   
Sbjct: 431 NVPFLVIGVLEAKGATPFGQDQDDIVLIPLTTAFARVSGGRYLSSLTARVEDATTIDESQ 490

Query: 231 EEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMHM 290
             I+  L+   G  +F V   + L E +      LT+ L  VA ISLLVG +G+ N M +
Sbjct: 491 AAIESLLQARHGKVDFQVRNTQSLLEMVEKTQNSLTLLLGAVALISLLVGGIGVMNIMLV 550

Query: 291 SILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAAISG 350
           S+ ER ++IGI  A GA  + IL  F  EA  +   GG+ G  LG+  A       A++ 
Sbjct: 551 SVTERTREIGIRLATGARASDILLQFNTEAVAVCGVGGLAGVGLGLGAA------LAVAE 604

Query: 351 YGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           +GL   +     IV     +F+ G+L GY PAR  A+L+PV  L  E
Sbjct: 605 FGLPVRFTPGPPIV-AFCCAFLTGLLFGYLPARKAARLDPVVALSAE 650