Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 403 a.a., ABC-type antimicrobial peptide transport system, permease component from Dechlorosoma suillum PS

 Score =  161 bits (407), Expect = 4e-44
 Identities = 114/413 (27%), Positives = 212/413 (51%), Gaps = 33/413 (7%)

Query: 5   DVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVL 64
           + +  A R I +   +SFLT++G+VIG+ A++++++LG G    +  +I+++G+N++ + 
Sbjct: 4   NAILLALREIRRNLMRSFLTVLGIVIGVAAVITMVTLGNGATRMVAEQISSLGSNLLILR 63

Query: 65  PSQNFG---GPAVSKNFNDNDVSAV-RNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVIE 120
           P Q  G     A + NF   DV A+   V  ++ V      +  L    ++   +V    
Sbjct: 64  PGQRLGPGRDSAGAPNFRAADVEALLTQVPSLKAVAPVVSSTVTLVAGAENWSSSV---- 119

Query: 121 PSKFTHVYSKTWGYEPYKGRWIEDSD----KYSCMIGYALATNSFDREIDIGDKITINDK 176
            +  T+ Y     ++   GR   D +    K  C+IG  +    F  +  +G+ + + + 
Sbjct: 120 -TGSTNAYFVAGNWKLAAGRQFSDEEMRAGKAVCVIGNTVKQKLFAGQSPLGNAVRVKNF 178

Query: 177 KYKVIGILEETGNPRT---ENSVILSKDVGEE--LFEINNEYNMMIVSVRSGEDVNLVSE 231
             +++GIL   G       ++ V+L   V  +  L     + + +++S++ G     V E
Sbjct: 179 SCEIVGILASKGQGAMGMDQDDVVLMPLVTAQRRLTGKTQDVSTLMLSLKDGASSPRVME 238

Query: 232 EIKDELEDSR-----GDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISN 286
           +I+  + + R      D+NF+++  +Q+AE+++     +T  L  VA +SLLVG +GI N
Sbjct: 239 QIRQLMRERRKLAENDDDNFNLMDTKQIAEALSGTIGTMTTLLGAVAAVSLLVGGIGIMN 298

Query: 287 TMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIA 346
            M +S+ ER ++IGI  A+GA    +L  F++EA  L  FGG+VG +L +L   A   ++
Sbjct: 299 IMLVSVTERTREIGIRLAIGALENEVLLQFLIEAVALSAFGGLVGIILALL---ACLGLS 355

Query: 347 AISGYGLIRAWISWELIVGVLVFSF--VVGILSGYFPARSGAKLNPVDTLRGE 397
           A+ G   +     +   + +L F F   +G++ GY PAR  A L+P++ LR E
Sbjct: 356 ALMGMPFL-----FNPGINLLAFGFSAAIGVIFGYVPARRAAGLDPIEALRHE 403