Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 406 a.a., ABC-type antimicrobial peptide transport system, permease component from Dechlorosoma suillum PS

 Score =  137 bits (345), Expect = 6e-37
 Identities = 111/420 (26%), Positives = 201/420 (47%), Gaps = 44/420 (10%)

Query: 3   ITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVIS 62
           +T ++  A R +   + ++FLT++G+VIG+ A+V ++++G G Q  +   I ++G+N+  
Sbjct: 2   LTAMLGEAWRAMGANRLRTFLTMLGMVIGVGAVVLMLAIGQGAQYAVAQSINSMGSNLFI 61

Query: 63  VLPSQNFGGPAVSKNFND-----NDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVL 117
           VL      G   S + N       D  A+  + GVE       GS +L Y   +    V+
Sbjct: 62  VLSGFTNAGGVRSGSGNAPTLTVTDAEAITELDGVETAAPVHQGSAQLVYGSSNWNSYVI 121

Query: 118 VIEPSKFTHVYSKTWGYEPYKGRWIEDSDKYS----CMIGYALATNSFDREIDIGDKITI 173
              P+   ++  ++W      G    DSD  +     +IG   A N F  E   G  + I
Sbjct: 122 GTTPA---YLDVRSWAL--VDGSPFTDSDLRASTRVALIGKTAAQNLFGAENPTGKTLRI 176

Query: 174 NDKKYKVIGILEETGNP---RTENSVILSK--DVGEELFEINNEYNMMIVSVRSGEDVNL 228
               + ++G+L   G     R ++ V++        +LF    + ++  + V++      
Sbjct: 177 GQAPFLILGVLAPKGQSLDGRDQDDVLIVPLTTAQRKLFGTPFQGSVRAIMVKAA----- 231

Query: 229 VSEEIKDELEDSRG-------------DENFSVLTAEQLAESINSIFEVLTIFLVGVAGI 275
            + E+   +E+S               D++F+V     +A+S      ++++ L  +A +
Sbjct: 232 -APEVMPAVENSMNALLRQRHRIRPGQDDDFNVRNLTAVADSAAETTRIMSLLLGAIASV 290

Query: 276 SLLVGAVGISNTMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLG 335
           SLLVG +GI N M +S+ ER ++IGI  A+GA    IL+ F++EA  + + G ++G +LG
Sbjct: 291 SLLVGGIGIMNIMLVSVTERTREIGIRMAIGAREKDILTQFLLEAIVISIAGCLIGLLLG 350

Query: 336 ILIAKAIEYIAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLR 395
           I  A        ++G  +I   IS   ++     +  VGI  GY+PAR  A+L+P++ LR
Sbjct: 351 IGGAVLTN---LLTGTAVI---ISGSSVIVAFSVAAGVGIFFGYYPARKAARLDPIEALR 404