Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 656 a.a., ABC transporter, ATP-binding/permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (359), Expect = 2e-38
 Identities = 109/414 (26%), Positives = 207/414 (50%), Gaps = 32/414 (7%)

Query: 2   RITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVI 61
           R  + +  A   ++  + ++FLT++G++IGI ++VS+++LG G Q  I   I+++G N I
Sbjct: 257 RYAEALKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTI 316

Query: 62  SVLPSQNFGG--PAVSKNFNDNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVI 119
            + P   FG    A  +    +D +A++N+  V+ V  +   S  +   +++   +V  +
Sbjct: 317 DIRPGLGFGDRRSARVRTLTASDANALKNLPYVDSVTPSISSSVTVRLGNKAVTASVNGV 376

Query: 120 EPSKFTHVYSKTWGYEPYKGRWIEDSDKYSCMIGYALATNSFDREID----------IGD 169
            P  F     +  GYE  +G++ +D D    +   A+  ++  +++           IG 
Sbjct: 377 GPEFF-----RVRGYELAQGQFWDD-DSVDALAQDAVIDDNTRKQLFPDSTGAMGSVIGQ 430

Query: 170 KITINDKKYKVIGILEET----GNPRTENSVILSKDVGEELFEINNEYNMMIVSVRSGED 225
            I + D   ++IG+ +      GN    N  +    V   +  +  +Y +  ++VR  E 
Sbjct: 431 VIFLGDLPVRIIGVTKPKESAFGNSDALNVWVPYTTVSGRM--VGKKY-LDGITVRLDES 487

Query: 226 V--NLVSEEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVG 283
           V  N   + I   L+   G ++F  +  + + ++I      +T+ +  +A ISL+VG +G
Sbjct: 488 VPSNAAEQGIITLLKMRHGTQDFFTINTDTIRQNIEKTTATMTLLISAIAVISLVVGGIG 547

Query: 284 ISNTMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIE 343
           + N M +S+ ER ++IG+  A+GA  + IL  F++EA  + L GG +G  L  LI   + 
Sbjct: 548 VMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLI--GVV 605

Query: 344 YIAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           +  A   + +I +  S   IV     S ++G+L G+ PAR+ A+L+PV+ L  E
Sbjct: 606 FAQAGGSFQMIYSTTS---IVAAFACSTLIGVLFGFLPARNAARLDPVEALARE 656