Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 419 a.a., ABC transporter, putative permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 92/420 (21%), Positives = 184/420 (43%), Gaps = 48/420 (11%)

Query: 14  ITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVLP---SQNFG 70
           I + K ++FLT   V  GI  ++ L+  G G+ +      +    N I + P   S+++ 
Sbjct: 12  IKRNKLRTFLTGFAVAWGIFMLIVLLGAGNGLIHAFEQSASERAMNSIKIFPGWTSKSYD 71

Query: 71  GPAVSKNFN-DNDVSAVRNVRGVEEVVAA----WFGSYELEYRDQSHYGNVLVIEPSKFT 125
           G    +    DN      N    + V+ A    + G   L +  +    N+  + P+   
Sbjct: 72  GLKEGRRIRLDNKDLNTTNKNFPDHVIKAGATVYQGGVNLSFGPEYVNLNLSGVYPN--- 128

Query: 126 HVYSKTWGYEPYKGRWIEDSD----KYSCMIGYALATNSFDREID--IGDKITINDKKYK 179
             +++    + +KGR+I + D    +   ++    A   FD+     IG  +   +  Y+
Sbjct: 129 --HTEVEVVKLFKGRFINEIDIKERRKVIVLHKKTAEILFDKTHTDPIGQFVNAGNVVYQ 186

Query: 180 VIGILEETGNPRTENSVILSKDVGEELFEINNEYNMMIVSVRSGEDVNLVSEEIKDELED 239
           V+G+  + G+   ++   L     + ++   ++ N +I++ ++ E +   +EE +     
Sbjct: 187 VVGLYNDKGDSG-DSDAYLPFTTLQTIYNKGDKLNNLIMTTKNLETIES-NEEFEAHYRK 244

Query: 240 SRG-DENFSVLT----------AEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTM 288
             G ++ F                 L +   S    + I+++G+   +LL G VG+SN M
Sbjct: 245 VIGANQRFDPTDHSAIWIWNRFTNYLQQQQGSAMLRIAIWVIGI--FTLLSGIVGVSNIM 302

Query: 289 HMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAAI 348
            +++ ER ++ GI KALGA+  +IL + +VE+  +    G +G + GI    A E++   
Sbjct: 303 LITVKERTREFGIRKALGAKPLSILWLIIVESVTITTIFGYIGMVAGI---GATEWMNNA 359

Query: 349 SGYGLIRAWISWELI-------VGVLVFS----FVVGILSGYFPARSGAKLNPVDTLRGE 397
            G   +   I  E +       +G+ + +     + G L+G FPAR    + P++ LR +
Sbjct: 360 FGNQTMDNGIWSETVFLNPTVDIGIAIQATLTLVIAGTLAGLFPARKAVSIRPIEALRAD 419