Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 656 a.a., ABC transporter related (RefSeq) from Shewanella sp. ANA-3

 Score =  149 bits (375), Expect = 3e-40
 Identities = 111/414 (26%), Positives = 208/414 (50%), Gaps = 32/414 (7%)

Query: 2   RITDVVSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVI 61
           R  + +  A   ++  + ++FLT++G++IGI ++VS+++LG G Q  I   I+++G N I
Sbjct: 257 RYAEALKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTI 316

Query: 62  SVLPSQNFGG--PAVSKNFNDNDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVI 119
            + P   FG    A  +    +D +A++N+  V+ V  +   S  + Y +++    V  +
Sbjct: 317 DIRPGSGFGDRRSARVRTLTASDANALKNLPYVDSVTPSIGSSATVRYGNKAVTATVNGV 376

Query: 120 EPSKFTHVYSKTWGYEPYKGRWIEDSDKYSCMIGYALATNSFDREI----------DIGD 169
            P  F     +  GYE  +G++ +D D  + +   A+   +  +++           IG+
Sbjct: 377 GPEFF-----RVRGYELAQGQFWDD-DSVNALAQDAVIDENTRKQLFPNSSGAMNSAIGE 430

Query: 170 KITINDKKYKVIGILEET----GNPRTENSVILSKDVGEELFEINNEYNMMIVSVRSGED 225
            I + D   ++IG+ +      GN    N  +    V   +  +  +Y +  ++VR  E 
Sbjct: 431 VIFLGDLPVRIIGVTQPKESAFGNSDALNVWVPYTTVSGRM--VGKKY-LDGITVRLDES 487

Query: 226 V--NLVSEEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVG 283
           V  N   + I   L+   G ++F  +  + + ++I      +T+ +  +A ISL+VG +G
Sbjct: 488 VPSNAAEQGIISLLKMRHGTQDFFTINTDTIRQNIEKTTATMTLLISAIAVISLVVGGIG 547

Query: 284 ISNTMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIE 343
           + N M +S+ ER ++IG+  A+GA  + IL  F++EA  + L GG +G  L  LI   + 
Sbjct: 548 VMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLI--GVV 605

Query: 344 YIAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           +  A   + +I +  S   IV     S ++G+L G+ PAR+ A+L+PVD L  E
Sbjct: 606 FAQAGGSFQMIYSTTS---IVAAFACSTLIGVLFGFLPARNAARLDPVDALARE 656