Pairwise Alignments

Query, 389 a.a., betaine/proline/choline family ABC transporter ATP-binding protein from Methanococcus maripaludis S2

Subject, 392 a.a., ABC transporter for Carnitine, ATPase component (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  259 bits (661), Expect = 1e-73
 Identities = 141/291 (48%), Positives = 202/291 (69%), Gaps = 8/291 (2%)

Query: 5   IIQVTELYKIFGKKPEKAYPLIKEGFSRQEIKEKTKQVVGLRNINFDVKRGEIFVIMGLS 64
           II+  ++  IF  +P+ A  L+ +G SR EI ++T  +VG+   +  +++GEI V+MGLS
Sbjct: 3   IIRFEDVDVIFSNRPKAALDLLDKGLSRPEILQQTGLIVGVEKASLSIEKGEICVLMGLS 62

Query: 65  GSGKSTLIRCINRLIKPTFGKIVLETGA---DISQMSEKELLEIRRKYFGMVFQKFGLLP 121
           GSGKS+L+RCIN L   + GK+ +E      DI+  S  EL  +R K   MVFQKF L+P
Sbjct: 63  GSGKSSLLRCINGLNTVSRGKLFVEHEGRQIDIASCSPAELKMMRTKRIAMVFQKFALMP 122

Query: 122 NRSVLENVALGLEIQGMGLEERIEKSEKALSLVGLKGWEKSKISELSGGMQQRVGLARGL 181
             +V EN++ GLE+QG   +ER +  ++ L LVGL  W   K  ELSGGMQQRVGLAR L
Sbjct: 123 WLTVRENISFGLEMQGRPEKERRKLVDEKLELVGLTQWRNKKPDELSGGMQQRVGLARAL 182

Query: 182 AVNPEILLMDEPFSALDPLIRLEMQELLLKIQKKMKKTIIFITHDLNEAIKLGDRIMILN 241
           A++ +ILLMDEPFSALDPLIR  +Q+ LL++Q+K++KTI+F++HDL+EA+KLG RI I+ 
Sbjct: 183 AMDADILLMDEPFSALDPLIRQGLQDELLELQRKLQKTIVFVSHDLDEALKLGTRIAIM- 241

Query: 242 EEGSLVQLSHPEEILLNPQNDFVESFVKDVDKTTVIRAESLVKKPEFTLNN 292
           ++G ++Q S PEEI+LNP +D+V +FV   +   V+   SL++    TL+N
Sbjct: 242 KDGKIIQYSKPEEIVLNPADDYVRTFVAHTNPLNVLCGRSLMR----TLDN 288