Pairwise Alignments

Query, 389 a.a., betaine/proline/choline family ABC transporter ATP-binding protein from Methanococcus maripaludis S2

Subject, 350 a.a., putative glycine betaine/L-proline transport system, ATP binding subunit from Phaeobacter inhibens DSM 17395

 Score =  265 bits (677), Expect = 1e-75
 Identities = 145/337 (43%), Positives = 227/337 (67%), Gaps = 12/337 (3%)

Query: 1   MDEPIIQVTELYKIFGKKPEKAYPLIK-EGFSRQEIKEKTKQVVGLRNINFDVKRGEIFV 59
           M+   IQ+  LYKIFG  P    P+++ +G  + ++ E+ K V+GL++I+ D++ GEI V
Sbjct: 1   MNTTKIQIRNLYKIFGANPGTVLPMVRNQGMGKSQLLEEHKHVLGLQDISIDIQAGEISV 60

Query: 60  IMGLSGSGKSTLIRCINRLIKPTFGKIVLETGADISQMSEKELLEIRRKYFGMVFQKFGL 119
           IMGLSGSGKSTLIR +NRLI+PT G+I+L+ G D+  +   +L E+R++   MVFQKF L
Sbjct: 61  IMGLSGSGKSTLIRHLNRLIEPTAGEILLD-GQDVMDLDPVQLREMRQRSMSMVFQKFAL 119

Query: 120 LPNRSVLENVALGLEIQGMGLEERIEKSEKALSLVGLKGWEKSKISELSGGMQQRVGLAR 179
           LP+++VLEN    L ++G         + K L  VGL G+E    S+LSGGMQQRVG+AR
Sbjct: 120 LPHKTVLENAETALRVRGDDRATCEAAARKWLDRVGLSGFENRYPSQLSGGMQQRVGIAR 179

Query: 180 GLAVNPEILLMDEPFSALDPLIRLEMQELLLKIQKKMKKTIIFITHDLNEAIKLGDRIMI 239
            L  + +I+L+DE FSALDPLIR +MQ+LLL++Q ++ KTI+FITHDL+EA+KL D ++I
Sbjct: 180 ALTADTDIMLLDEAFSALDPLIRTDMQDLLLELQTELHKTIVFITHDLDEALKLADHLVI 239

Query: 240 LNEEGSLVQLSHPEEILLNPQNDFVESFVKDVDKTTVIRAESL--VKKPEFTLNNTIEKE 297
           L ++G++VQ   P+ I++NP + ++E+FV D+++  V+RA ++    +PE  L   ++ +
Sbjct: 240 L-KDGAVVQQGPPQGIVMNPADPYIEAFVGDINRARVLRAGTIAVTGEPEGRLAGEVDWQ 298

Query: 298 NAVKIL-----GELNLDFAYVLDDSGKYIGVVNNEEL 329
           + ++ +     G  ++  + + D  G+  G +   EL
Sbjct: 299 DTLETVIKKAGGRADVSVSVLRD--GQVAGKIEMSEL 333