Pairwise Alignments

Query, 277 a.a., ABC transporter permease subunit from Methanococcus maripaludis S2

Subject, 281 a.a., ABC transporter for Carnitine, permease component (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  206 bits (525), Expect = 3e-58
 Identities = 102/263 (38%), Positives = 172/263 (65%), Gaps = 1/263 (0%)

Query: 9   IGKFLVNLIDFLIDNYSGFFDLISYVIQSGVDFFHFLLFSINPYLMILLIAVIVWKTVNL 68
           +G+++   +++L  N +  FD I+  +++ +    F L   NP  +I LIA++       
Sbjct: 9   LGQYIAGFVEWLTQNGANTFDAIALFLETMIHGVTFALTWFNPLALIGLIALLAHFIQRK 68

Query: 69  KSM-LYSVFFLVIIVMMGLWDTSMITLSLIITSTLIALLLGIPLGIVKARSKLVSTLLDP 127
             + ++ +   ++I+ +G W  +M TL+ ++ +TL+ +L+G+PLGIV A   +  T++ P
Sbjct: 69  WGLTIFVIASFLLILNLGYWQETMETLAQVLFATLVCVLIGVPLGIVAAHKPMFYTMMRP 128

Query: 128 MLDVMQTLPSLAYLIPAVLFFGIGEVPGVIATVIFAMPPAIKLTALGIEQVSNELIEVGR 187
           +LD+MQT+P+  YLIP +  FG+G VPG+I+TV+FA+   I+LT LGI  V +EL++ G+
Sbjct: 129 VLDLMQTVPTFVYLIPTLTLFGLGVVPGLISTVVFAIAAPIRLTYLGIRDVPDELMDAGK 188

Query: 188 AFGGTSWQILTKIELPTAVPSIMMGVNQAIMLSFSMVVIAGFIGSGGLGEVIISGIQRYS 247
           AFG +  Q+L++IELP A+PSI  G+ Q IMLS SMVVIA  +G+ GLG+ +++ +    
Sbjct: 189 AFGCSRRQLLSRIELPHAMPSIAAGITQCIMLSLSMVVIAALVGADGLGKPVVNALNTAD 248

Query: 248 LAPALEAGIAVTFLAVIFDRITR 270
           +A   EAG+A+  LA++ DRI +
Sbjct: 249 IALGFEAGLAIVLLAIMLDRICK 271