Pairwise Alignments

Query, 277 a.a., ABC transporter permease subunit from Methanococcus maripaludis S2

Subject, 664 a.a., amino acid transport sytem, permease protein from Phaeobacter inhibens DSM 17395

 Score =  174 bits (442), Expect = 4e-48
 Identities = 90/266 (33%), Positives = 147/266 (55%), Gaps = 13/266 (4%)

Query: 10  GKFLVNLIDFLIDNYSGFFDLISYVIQSGVDFFHFLLFSINPYLM-------ILLIAVIV 62
           G F    + +L  NY   F+ +       V F H+ +  I   L+       + ++ ++ 
Sbjct: 389 GDFWSETVKYLNVNYFDAFEAVK------VFFLHWFMLPIKKTLLGIPWPWAVAMLTLVG 442

Query: 63  WKTVNLKSMLYSVFFLVIIVMMGLWDTSMITLSLIITSTLIALLLGIPLGIVKARSKLVS 122
           W+   L+  L       +I   GLW  +M+T+ L   S ++A L+G+PLG++ A +K   
Sbjct: 443 WRAGGLRLALMCGSMSTLIAFSGLWAKAMVTVYLCGASVILATLIGVPLGVLAALNKRAG 502

Query: 123 TLLDPMLDVMQTLPSLAYLIPAVLFFGIGEVPGVIATVIFAMPPAIKLTALGIEQVSNEL 182
             +   +D +QTLPS  YLIP V+ F +G+   +IA V++A+ PA++  A G+  VS EL
Sbjct: 503 VAIGLFIDTLQTLPSFVYLIPVVMLFRVGDFTAMIAIVLYALAPAVRYAAHGMRSVSGEL 562

Query: 183 IEVGRAFGGTSWQILTKIELPTAVPSIMMGVNQAIMLSFSMVVIAGFIGSGGLGEVIISG 242
           IE G   G T WQ+L  + LP A+P I++G+NQ IML+ SM+VI   +G+  LG+ +   
Sbjct: 563 IEAGLVSGCTRWQLLRMVRLPMALPEILLGINQTIMLALSMLVITALVGTRDLGQEVYIA 622

Query: 243 IQRYSLAPALEAGIAVTFLAVIFDRI 268
           + +      L AG+A+ F+A+I DR+
Sbjct: 623 LTKADTGRGLVAGLAIAFIAIIADRL 648



 Score =  158 bits (399), Expect = 3e-43
 Identities = 74/190 (38%), Positives = 125/190 (65%)

Query: 81  IVMMGLWDTSMITLSLIITSTLIALLLGIPLGIVKARSKLVSTLLDPMLDVMQTLPSLAY 140
           + + G WD++M+TL+ ++ +  I    G+  GI   R  +   +L P+LD+MQT+P  AY
Sbjct: 144 LAVFGQWDSAMVTLASVLIAVPIGAGGGLLTGIWAYRHPVGERILSPLLDLMQTIPIFAY 203

Query: 141 LIPAVLFFGIGEVPGVIATVIFAMPPAIKLTALGIEQVSNELIEVGRAFGGTSWQILTKI 200
           L+P +  FG G V  ++AT+I+A PP I++T L ++ V  E+++ GR  G T  Q++ ++
Sbjct: 204 LVPILFMFGFGPVSALVATIIYATPPMIRVTILALKSVDPEILDFGRMAGTTPRQLMWRV 263

Query: 201 ELPTAVPSIMMGVNQAIMLSFSMVVIAGFIGSGGLGEVIISGIQRYSLAPALEAGIAVTF 260
            +P+A  S+M+GVNQ IML+ +MV+IA  IG+GGLG  +++ ++R  +    EAGIA+  
Sbjct: 264 LVPSASQSLMVGVNQVIMLTLNMVIIASMIGAGGLGFDVLAALRRLDIGAGFEAGIAIVV 323

Query: 261 LAVIFDRITR 270
           LA+  DR+++
Sbjct: 324 LAIAVDRLSQ 333