Pairwise Alignments

Query, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 315 a.a., ABC transporter for Carnitine, periplasmic substrate-binding component 1 (from data) from Pseudomonas fluorescens FW300-N2C3

 Score =  123 bits (309), Expect = 5e-33
 Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 10/271 (3%)

Query: 30  DTEK-GTIKFGLPPWPGVTVKSNVVKVILEEQGYNVELNQLDAGITYAKLADG-DLDVSL 87
           D EK  T+ F    W  +TV +    V+L+  GY  +   +   +TY  LADG ++DV L
Sbjct: 23  DPEKCSTVNFSDVGWTDITVTTATTSVVLDALGYKTKTTMISVPVTYKSLADGKNMDVFL 82

Query: 88  AGWLPTTHEEYWT-QYGNQLEMVHVNVGKTALGLAVPTYTYEAGIQSITDLNGNEELFDG 146
             W+PT   +    +    +E V  N+      LAVP   Y+ G+    D+   ++  DG
Sbjct: 83  GNWMPTMENDIKAYREAGTVETVRTNLKGAKYTLAVPQALYDKGLHDFADIPKFKKELDG 142

Query: 147 KIIGIEPGAG----IMSNTEKAIDSYSLSGYELQSSSTPAMMAELARAINEDENIVVTVW 202
           KI GIEPG      I S  EK       +G+++  SS   M++++ RA     ++V   W
Sbjct: 143 KIYGIEPGNDGNRLIQSMIEKNAFGLKDAGFKVVESSEAGMLSQVDRASKRGTDVVFLGW 202

Query: 203 EPHSVFFKFDIKMLDDPEKVYGDGDKVYTIA---RTDFKDDYPEVYEFFQKFEVDPSVQS 259
            PH +  +F I+ L   +  +G      T+A   R  +  +   V +  +  E    ++S
Sbjct: 203 APHPMNTRFKIQYLTGGDDFFGPDFGAATVATNTRKGYSQECSNVGQLLKNLEFTVDMES 262

Query: 260 EWIYKYSDEGMDPEEVAEEWVANNPELVENW 290
           + +    D+ M PE  A+ W+  NP++++ W
Sbjct: 263 QLMGNVLDDKMKPEAAAKAWLKKNPQVLDTW 293