Pairwise Alignments

Query, 388 a.a., cation:proton antiporter from Methanococcus maripaludis S2

Subject, 587 a.a., transporter, CPA2 family from Pseudomonas syringae pv. syringae B728a

 Score =  103 bits (257), Expect = 1e-26
 Identities = 89/393 (22%), Positives = 175/393 (44%), Gaps = 33/393 (8%)

Query: 2   DISWVLFTVGVCLIFGKIGNEIMWRFGFPSVFGEILIGIIFG-NLLFFGIVDSSHLTLHE 60
           D++ ++   GV  I       +  R   P V G I+ G I G +   F ++       H+
Sbjct: 9   DLAVIMLVAGVVTI-------LFHRLRQPVVLGYIVAGFIIGPHTPPFSLI-------HD 54

Query: 61  NDIFDFLSTVGIMFLLFISGLEIDIHRLKKTENISIVAAVLGAVFPLIFGYISLSYFGYT 120
            +    L+ +G++FL+F  GLE  + +L K    + +AA L     +  GY    +FG+ 
Sbjct: 55  EETIKILAELGVIFLMFCLGLEFSLRKLFKVGATAFIAAFLEIALMIWIGYEIGQFFGWK 114

Query: 121 AKESIVGGVILTATSIGITARLLMDLKVLKTDVGAAAISASILDDFLGLILLIL------ 174
             +S+  G IL  +S  I  + L DLK+             I++D LG+ ++ L      
Sbjct: 115 TMDSLFLGAILAISSTTIIVKALNDLKMKNQRFAQLIFGVLIVEDILGIGIIALLSGIAV 174

Query: 175 --AVGSGSLLGLISEITVFFIITGYFGWKLIKKYLIFAEKFHIEKTVLSFTIALMFLFSF 232
             +V SG +   + ++++F I+    G  ++ + L +  +F   + +L   + L F F  
Sbjct: 175 SGSVSSGEVFSTVGKLSLFMIVALVIGILVVPRLLSYVARFESNEMLLITVLGLCFGFCL 234

Query: 233 LSESWFEVAIEGAFMAGLILSKTSEGKTLAKEIKSIGNSFLIPLFFIYTGARLNLTAFLN 292
           L        + GAF+ G I++++ E   + + I+ + + F   +FF+  G  ++    L 
Sbjct: 235 LVVKLEYSMVLGAFLIGAIMAESRELLKIERLIEPVRDMF-SAIFFVAIGLLIDPGILLQ 293

Query: 293 HE-ALILATIFIIVGVFTKFVGWGLGAKIMGKWDLKKSIQLASASVPRAEIALINLMIAV 351
           +   + + T+ +++G   K +  GLGA I G  D + S+++        E +     I  
Sbjct: 294 YAWPIAVITVAVVLG---KMLSCGLGAFIAGN-DGRTSLRVGMGLSQIGEFS----FIIA 345

Query: 352 SAGVILEENISKFIAATLIFVTFSIVITPPLLK 384
           + G+ L+          +     + ++TP L++
Sbjct: 346 ALGMTLQVTSDFLYPVAVAVSAITTLLTPYLIR 378