Pairwise Alignments

Query, 458 a.a., nitrogenase from Methanococcus maripaludis S2

Subject, 500 a.a., NifD nitrogenase molybdenum-iron protein alpha chain from Sinorhizobium meliloti 1021

 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 89/405 (21%), Positives = 159/405 (39%), Gaps = 76/405 (18%)

Query: 27  VKNSMPLIHGSHGCSTYMRFQLGRHFKEAVNVAS-------SSMSEANAVLGGEENLKHA 79
           +K+ + + HG  GC  Y   Q   ++     + +       S   E + V GG++ L+  
Sbjct: 85  IKDMVHISHGPVGCGQYSWSQRRNYYVGTTGIDAFVTMQFTSDFQEKDIVFGGDKKLEKI 144

Query: 80  IRNVSKIYGPEIIGVT--TSCLSETIGDDVEGIIRLFKTQNDDLPEIVPISTPSYKHTHV 137
           I  + +++ P   GVT  + C    IGDD+E + R  K   +    IVP+          
Sbjct: 145 IDEIEELF-PLNNGVTVQSECPIGLIGDDIEAVSR--KKAEEYKTTIVPV--------RC 193

Query: 138 EGYDSTVKALVENLATPS--------------KPNSKLNVITGMVSPGDIAETKRILREM 183
           EG+    ++L  ++A  +                   +NVI      GD   ++ +L E+
Sbjct: 194 EGFRGVSQSLGHHIANDAIRDWVFDTTEVAYEAGRYDVNVIGDYNIGGDAWASRILLEEI 253

Query: 184 GIESIILTDTSESMDAPFDGEVSFVSSAGTTVEELKDTANSFATISLC-KHANSAAKFLH 242
           G+  +            + G+         T+ E++    +   +  C +  N   + + 
Sbjct: 254 GLHVV----------GNWSGD--------ATLAEIERAPTAKLNLIHCYRSMNYICRHME 295

Query: 243 EAYGINSVSPYLPIGLQSTDEFMNELCKLTNKEIPEQITRERGK---LIDAMIDAHQHNF 299
           E YG+  +  Y   G    +  + ++ K    EI E+  R   K   L DA+ID +    
Sbjct: 296 EKYGVPWME-YNFFGPSQIEASLRQIAKHFGPEIEERAERVIAKYSGLTDAVIDKYWPRL 354

Query: 300 -GRKVAIY----GDPDVVVGFTRFVLELGMIPSIVCTGSESKTFVEDIKAVTKDSKHKPV 354
            G++V +Y        V+  +     +LGM   IV TG E     +D +      K   +
Sbjct: 355 HGKRVMLYVGGLRPRHVITAYE----DLGM--EIVGTGYEF-AHNDDYQRTGHYVKEGTL 407

Query: 355 ILAPGDLYDLHQEIKKSKVDLLIGNSYGSRIAGAENIPLIRMGFP 399
           I      Y+L + I++ + DL+     GS I   E   + +MG P
Sbjct: 408 IYDDVTGYELEKFIERIRPDLV-----GSGI--KEKYSVQKMGIP 445