Pairwise Alignments

Query, 480 a.a., nitrogenase iron-molybdenum cofactor biosynthesis protein NifE from Methanococcus maripaludis S2

Subject, 459 a.a., nitrogenase component 1 from Rhodopseudomonas palustris CGA009

 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 32/326 (9%)

Query: 58  PTCDKNSTPGMITQRSCVYG---GARVVLMPITDAVHLVHGPIGCAACTWDIRGSKSTGD 114
           PT    S+PG I Q    YG   GA   ++ I  A+ + H   GCA   +       +G 
Sbjct: 11  PTGSFCSSPGAIEQVR--YGCSLGALASVIAIPGAIPITHCGPGCATKQFHAL----SGI 64

Query: 115 KLYKNGF----STDLQEKDIVFGGEKKLYESILEVNKLYHPGAIFVYSTCVVGLIGDDLK 170
             Y+ G     ST+L  ++++FGG  +L E I    K+       V + C+ GL+GDD+ 
Sbjct: 65  NAYQGGEFHVPSTNLGNQEVIFGGADRLDELIASTLKVMEADLFVVQTGCIPGLVGDDVG 124

Query: 171 AVCRQAQEATGCRVIPVQSEGFKSFNKTAGHKLACDAMLDYVIGTEEPEEEH----PYSI 226
           +V R+ Q+  G  ++  ++ G++  N T GH+    A++D  +   +   +H     +S+
Sbjct: 125 SVVRKYQK-RGVPIVVAETSGYRGNNFT-GHETVIRAIIDQFVDAGDAPLQHGLVNVWSL 182

Query: 227 NIIGEFNVAGDLWGIIPLYEKMGVKVHTAI-TGDSTVAKVASAHRSKLNIVQCQKSSNYL 285
                    GDL  I  + E +G++V+       + VA+  +  R++ N+V         
Sbjct: 183 LPYQNPFWRGDLSEIRRILEGIGLQVNILFGPASAGVAEWRAIPRAQFNLVLSPWLGLST 242

Query: 286 AAQMEKKYGIPSIKVNF--FGLDETTKSLRAVAEFFGDEEMIKRTEELIKSEIKNLRDEI 343
           A  +E+ YG P +       G   T+  LR V EF G +    R E  I  E K    E 
Sbjct: 243 AQHLEELYGQPFLHEPTIPIGAKATSAFLRRVVEFAGLDR--ARAEAFIAQEEK----EH 296

Query: 344 SEYKKDLSGRTVAIYSGAHKSWALVS 369
             Y +D +      Y+G+   + L S
Sbjct: 297 YVYLRDFA----CFYAGSTSQYRLPS 318