Pairwise Alignments

Query, 480 a.a., nitrogenase iron-molybdenum cofactor biosynthesis protein NifE from Methanococcus maripaludis S2

Subject, 522 a.a., nitrogenase iron-iron protein, alpha chain from Rhodopseudomonas palustris CGA009

 Score =  241 bits (615), Expect = 4e-68
 Identities = 135/449 (30%), Positives = 242/449 (53%), Gaps = 12/449 (2%)

Query: 39  EALKARESQMCVSGKDDSIPTCDK----NSTPGMITQRSCVYGGARVVL-MPITDAVHLV 93
           + L  R+      G  D++ T       N+ PG I++R C Y GA+ V+  P+ D +H+ 
Sbjct: 10  KCLPERQKHAVTKGAGDNLATALPLGYLNTIPGSISERGCAYCGAKHVIGTPMKDVIHMS 69

Query: 94  HGPIGCAACTWDIRGSKSTGDKLY-KNGFSTDLQEKDIVFGGEKKLYESILEVNKLYHP- 151
           HGP+GC   TW  +   S  +    K  F+TD++EK IVFG E  L ++I+E  K     
Sbjct: 70  HGPVGCTYDTWQTKRYISDNNNFQLKYTFATDVREKHIVFGAEGLLKQNIIEAFKACPDI 129

Query: 152 GAIFVYSTCVVGLIGDDLKAVCRQA-QEATGCRVIPVQSEGFKSFNKTAGHKLACDAMLD 210
             + +Y TC   LIGDD+ AV  +  +E     +    S GF   +++ GH     A ++
Sbjct: 130 KRMTIYQTCATALIGDDINAVAAEVMEEMPDVDIFTCNSPGFGGPSQSGGHHKINIAWIN 189

Query: 211 YVIGTEEPEEEHPYSINIIGEFNVAGDLWGIIPLYEKMGVKVHTAITGDSTVAKVASAHR 270
             +GT EPE    Y IN +GE+N+ GD   ++  + +MG++V +  TG+ T   + + HR
Sbjct: 190 DKVGTVEPEITSDYVINYVGEYNIQGDQEVMLDYFTRMGIQVLSTFTGNGTYDGLRAMHR 249

Query: 271 SKLNIVQCQKSSNYLAAQMEKKYGIPSIKVNFFGLDETTKSLRAVAEFFGDEEMIKRTEE 330
           + LN+++C +S+ Y+  ++  +YGIP + ++ FG +  ++SLR +  FFG E+   R E 
Sbjct: 250 AHLNVLECARSAEYICNELRVRYGIPRLDIDGFGFEPLSQSLRKIGMFFGIED---RAEA 306

Query: 331 LIKSEIKNLRDEISEYKKDLSGRTVAIYSGAHKSWALVSAF-GELDMEIIMSGTQNGKPE 389
           +I  E    + E+  YK+ L G+ V ++ G  K W    A   E+ ++++   T+ G   
Sbjct: 307 IIAEETARWKPELDWYKERLKGKKVCLWPGGSKLWHWAHAIEEEMGVKVVSVYTKFGHQG 366

Query: 390 DYQQIRDHVCEGTLIVDDASSMELVQLLKEYKPDILISGAKEKYLSLKSGIPHCDFNHDR 449
           D ++      E  L +DD + +E ++ L++ +PDI+ +G +   ++ K  +P+ + +   
Sbjct: 367 DMEKGIARCGEDALAIDDPNELEGLEALEKLQPDIIFTGKRPGEVAKKVRVPYLNAHAYH 426

Query: 450 ITAFSGYQGFINFARVVHTAVMTPIWRLS 478
              + G++G++ FAR ++  + +P+ +LS
Sbjct: 427 NGPYKGFEGWVRFARDIYNGIYSPMHQLS 455