Pairwise Alignments

Query, 480 a.a., nitrogenase iron-molybdenum cofactor biosynthesis protein NifE from Methanococcus maripaludis S2

Subject, 461 a.a., Fe-only nitrogenase subunit beta from Rhodopseudomonas palustris CGA009

 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 85/403 (21%), Positives = 163/403 (40%), Gaps = 47/403 (11%)

Query: 73  SCVYGGARVVLMPITDAVHLVHGPIGCAACTWDIRGSKSTGDKLYKNGFSTDLQEKDIVF 132
           +C   GA+   + I D + +VHG  GC      +R   S   K      S+ + E   VF
Sbjct: 19  TCQPAGAQYASIGIKDCIGIVHGGQGCVMF---VRLLISQHLKESFEIASSSVHEDGAVF 75

Query: 133 GGEKKLYESILEVNKLY-HPGAIFVYSTCVVGLIGDDLKAVCRQAQEA--------TGCR 183
           G   ++ E++  +   Y H   + + +TC   +IGDD+  V  + QE             
Sbjct: 76  GALDRVEEAVDVLLMRYPHVKVVPIITTCSTEVIGDDVDGVVTKLQEELLDVKYPDREVH 135

Query: 184 VIPVQSEGFKSFNKTAGHKLACDAMLDYVIGTEEPEEEHPYSINIIGEFNVAGDLWGIIP 243
           +IP+    F   +   G+ +A    + +    ++P       IN+I  +   GD+  +  
Sbjct: 136 LIPIHCPSFVG-SMVTGYDVAVRDFVKHFSKKDKPS----LKINLITGWVNPGDVKELKH 190

Query: 244 LYEKMGVKVHTAIT-----------------GDSTVAKVASAHRSKLNIVQCQKSSNYLA 286
           L  +M V+ +                     G +T+A + +   ++  I   +      A
Sbjct: 191 LLAEMQVEANVLFEIESFDSPLMPDKSAVSHGSTTIADLTATADAQGTIALNRYEGGLAA 250

Query: 287 AQMEKKYGIPS-IKVNFFGLDETTKSLRAVAEFFGDEEMIKRTEELIKSEIKNLRDEISE 345
             ++ ++ +P+ I     G+  T   LR V E  G     K   E +  E     D I++
Sbjct: 251 TWLQTRWDVPAVIGPTPIGIRNTDTFLRNVKEMTG-----KPIPESLVKERGIALDAITD 305

Query: 346 Y-KKDLSGRTVAIYSGAHKSWALVSAFGELDME--IIMSGTQN-GKPED--YQQIRDHVC 399
                L+ + VAIY        L     +L+M+  +++ G +N G   D     ++ +V 
Sbjct: 306 LAHMFLADKKVAIYGNPDLVLGLAEYCLDLEMKPVLLLLGDENAGYANDPRIAALKANVD 365

Query: 400 EGTLIVDDASSMELVQLLKE-YKPDILISGAKEKYLSLKSGIP 441
               I+ +A   EL + +K   + D+++  +K +++++   IP
Sbjct: 366 YPMEIITNADLFELEERIKNGLELDLILGHSKGRFVAIDYNIP 408