Pairwise Alignments

Query, 462 a.a., nitrogenase molybdenum-iron protein subunit beta from Methanococcus maripaludis S2

Subject, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis JJ

 Score = 51.2 bits (121), Expect = 7e-11
 Identities = 96/462 (20%), Positives = 174/462 (37%), Gaps = 65/462 (14%)

Query: 21  CQPLGAMYAVSG-IERGMPLVHGSQGCSTFVRYGFARHFREPA---------------DI 64
           C   G    ++G I+  + +VH   GC+++      R+   P                 I
Sbjct: 49  CAFAGVKGVITGAIKDVLHVVHSPVGCTSYGNGTTKRYPTRPEMPDGSVFPVENFNLKHI 108

Query: 65  AVTSLHEDAAVFGGRKNLISGLGNLAARFK-PDVMGVVTTCSSEIIGDDVAGFIKTAKVE 123
             T L E   VFGG K L + +   A  +   + + V  TC++ +IGDD+    K  + E
Sbjct: 109 VGTDLTESDVVFGGMKKLKTTIREAAKEYPFVNAIYVYATCTTGLIGDDLDAVCKEMQAE 168

Query: 124 IAKKMGEEAANKIKIVQINTPSFV-EHQFKGYDNAIKAIVDTLA---EPKDEENGKLNII 179
           + K           +V  N P F    Q KG+      I + L    EP    +  +N+I
Sbjct: 169 LGK----------DVVAFNAPGFAGPTQSKGHHVGNYTIFEKLVGTKEPPKTTDYDINLI 218

Query: 180 PGIVNPGDIREIKHMLSLMGVEGILLTDTSDPFDSPLRPSKADKNPYYQKGGTPLADLQD 239
                 GD   ++     MG+  +L   T D     L         +  K    L   Q 
Sbjct: 219 GEYNIDGDYWVLEKYFDDMGI-NVLSKFTGDATHGEL--------CWMHKAKLSLVRCQR 269

Query: 240 CANSLGTISLANYANSAPASLEKKYNMPSKVSEAPIGIQNTDSFIRTVKKFTGNDVTDE- 298
            A  +  +            +E+KY +P    +   G +     +R V K+ G ++  E 
Sbjct: 270 SATYVAKL------------IEEKYGVPYLKVDF-FGPEYCAENLRAVGKYFGKEIEAEA 316

Query: 299 ILDERGIVIDAMADVASRYLFGRKVAIYGDPSITVGMARFVAE-LGMIPKVVCTGVKNEY 357
           ++ +    I    D     L G+K+ I      +  +++ + + LGM    +    ++E 
Sbjct: 317 VIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLSKPIEQYLGMDVVALSGLFEHED 376

Query: 358 FVNDLKKVAKESDEDIDALFGQDLRALDVYLKENPVDLMIGSSDGRLMAKDLGIPLYRVG 417
               +++ AK+    ID      L   +V  K  P ++++G    +     LG+P   + 
Sbjct: 377 GYEKMQERAKDGTIIIDD--PNTLEMEEVVEKYQP-EIVLGGIKEKYFFHKLGVPSVMIH 433

Query: 418 YPVYDRVGYQRRPIIGYNGALNLVDGITNTILDKYYETQDWK 459
                   Y+  P IG+ G +N+   I   I +  ++  +++
Sbjct: 434 -------SYENGPYIGFEGFVNMARDIYTAIYNPAWKLMEFE 468