Pairwise Alignments

Query, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 500 a.a., NifD nitrogenase molybdenum-iron protein alpha chain from Sinorhizobium meliloti 1021

 Score =  329 bits (844), Expect = 1e-94
 Identities = 179/469 (38%), Positives = 264/469 (56%), Gaps = 20/469 (4%)

Query: 9   DKDIPEREQHIYIKDSKEPKGH-------CKQRCNTNTIPGSMTERGCAFAGVKGVITGA 61
           DK    R++H+ +  +K+           C  + N  +IPG MT RGCA+AG KGV+ G 
Sbjct: 25  DKAAKRRKKHLSVAKNKQETAEEGQVVSECDVKSNIKSIPGVMTIRGCAYAGSKGVVWGP 84

Query: 62  IKDVLHVVHSPVGCTAYGNGTTKRYPTRPEMPDGSVFPVENFNLKHIVGTDLTESDVVFG 121
           IKD++H+ H PVGC  Y     + Y       D   F    F       +D  E D+VFG
Sbjct: 85  IKDMVHISHGPVGCGQYSWSQRRNYYVGTTGIDA--FVTMQFT------SDFQEKDIVFG 136

Query: 122 GMNKLKKVIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQAELGKDVVAFNAPGF 181
           G  KL+K+I E  + FP  N + V + C  GLIGDD++AV ++   E    +V     GF
Sbjct: 137 GDKKLEKIIDEIEELFPLNNGVTVQSECPIGLIGDDIEAVSRKKAEEYKTTIVPVRCEGF 196

Query: 182 AGPTQSKGHHVGNYTIFEKLVGTKEPP-KTTDYDINLIGEYNIDGDYWVLEKYFEDMGIN 240
            G +QS GHH+ N  I + +  T E   +   YD+N+IG+YNI GD W      E++G++
Sbjct: 197 RGVSQSLGHHIANDAIRDWVFDTTEVAYEAGRYDVNVIGDYNIGGDAWASRILLEEIGLH 256

Query: 241 VLSKFTGDATHGELCWMHKAKLSLVRCQRSATYVAKLIEEKYGVPYLKVDFFGPEYCAEN 300
           V+  ++GDAT  E+     AKL+L+ C RS  Y+ + +EEKYGVP+++ +FFGP     +
Sbjct: 257 VVGNWSGDATLAEIERAPTAKLNLIHCYRSMNYICRHMEEKYGVPWMEYNFFGPSQIEAS 316

Query: 301 LRAVGKYFGKEIE--AEAVIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLSKPIE 358
           LR + K+FG EIE  AE VI K        +D Y  +L GK++ +  GG +  H+    E
Sbjct: 317 LRQIAKHFGPEIEERAERVIAKYSGLTDAVIDKYWPRLHGKRVMLYVGGLRPRHVITAYE 376

Query: 359 QYLGMDVVALSGLFEHEDGYEKMQERAKDGTIIIDDPNTLEMEEVVEKYQPEIVLGGIKE 418
             LGM++V     F H D Y++     K+GT+I DD    E+E+ +E+ +P++V  GIKE
Sbjct: 377 D-LGMEIVGTGYEFAHNDDYQRTGHYVKEGTLIYDDVTGYELEKFIERIRPDLVGSGIKE 435

Query: 419 KYFFHKLGVPSVMIHSYE-NGPYIGFEGFVNMARDIYTAIYNPAWKLME 466
           KY   K+G+P   +HS++ +GPY G++GF   ARD+  A+ NP W L +
Sbjct: 436 KYSVQKMGIPFRQMHSWDYSGPYHGYDGFAIFARDMDLAVNNPVWDLYD 484