Pairwise Alignments

Query, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 519 a.a., nitrogenase iron-iron protein, alpha chain (NCBI) from Rhodospirillum rubrum S1H

 Score =  389 bits (999), Expect = e-112
 Identities = 204/465 (43%), Positives = 284/465 (61%), Gaps = 12/465 (2%)

Query: 1   MPFCLLDVDKDIPEREQHIYIKDSKEPKGHCKQRCNTNTIPGSMTERGCAFAGVKGVITG 60
           MP       + IPER +H  IK + E    C      NTIPGS++ERGCA+ G K VI  
Sbjct: 1   MPHHTFKCSECIPERTKHAVIKGADEDLTSCLPLGYLNTIPGSISERGCAYCGAKHVIGQ 60

Query: 61  AIKDVLHVVHSPVGCTAYGNGTTKRYPTRPEMPDGSVFPVENFNLKHIVGTDLTESDVVF 120
            +KDV+H+ H P+GCT Y    TKRY          +    NF LK+   TD+ E  +VF
Sbjct: 61  PMKDVIHISHGPIGCT-YDTWQTKRY----------ISDNNNFQLKYTYATDVREKHIVF 109

Query: 121 GGMNKLKKVIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQAELGK-DVVAFNAP 179
           G    LK+ I EA K FP +  + +Y TC T LIGDD+DA+  E+  EL   D+   N+P
Sbjct: 110 GAEKLLKQNILEAFKAFPDIKRMTIYQTCATALIGDDIDAIASEVMDELPDVDIFVCNSP 169

Query: 180 GFAGPTQSKGHHVGNYTIFEKLVGTKEPPKTTDYDINLIGEYNIDGDYWVLEKYFEDMGI 239
           GFAGP+QS GHH  N     + VGT EP  T+DY IN +GEYNI GD  V++ YF  MGI
Sbjct: 170 GFAGPSQSGGHHKINIAWVNQKVGTVEPEITSDYVINYVGEYNIQGDQEVMQDYFNRMGI 229

Query: 240 NVLSKFTGDATHGELCWMHKAKLSLVRCQRSATYVAKLIEEKYGVPYLKVDFFGPEYCAE 299
            +LS FTG+ ++  L  MH+A L+++ C RSA Y+   +  +YG+P L +D FG E  ++
Sbjct: 230 QILSTFTGNGSYDGLRAMHRAHLNVLECARSAEYICNELRVRYGIPRLDIDGFGFEPLSD 289

Query: 300 NLRAVGKYFGKEIEAEAVIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLSKPIEQ 359
           +LR +G +FG E  A+A+I +E  K +P+LD+YK +L+GKK+ +  GG K WH +  I++
Sbjct: 290 SLRKIGLFFGIEDRAQAIIDEETAKWKPQLDWYKERLRGKKVCLWPGGSKLWHWAHVIQE 349

Query: 360 YLGMDVVALSGLFEHEDGYEKMQERAKDGTIIIDDPNTLEMEEVVEKYQPEIVLGGIKEK 419
            +G++VV+L   F H+   EK   R  +G + IDDPN LE  E +E  +P+I+L G +  
Sbjct: 350 EMGLNVVSLYTKFGHQGDMEKGIARCGEGALAIDDPNELEGLEALEMLKPDIILTGKRPG 409

Query: 420 YFFHKLGVPSVMIHSYENGPYIGFEGFVNMARDIYTAIYNPAWKL 464
               K+ VP +  H+Y NGPY G+EG+V  ARDIY AIY+P ++L
Sbjct: 410 EVAKKVRVPYLNAHAYHNGPYKGYEGWVRFARDIYNAIYSPIFQL 454