Pairwise Alignments

Query, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 462 a.a., Nitrogenase (NCBI) from Rhodospirillum rubrum S1H

 Score = 54.3 bits (129), Expect = 9e-12
 Identities = 98/469 (20%), Positives = 188/469 (40%), Gaps = 79/469 (16%)

Query: 49  CAFAGVKGVITGAIKDVLHVVHSPVGCTAYGNGTTKRYPTRPEMPDGSVFPVENFNLKHI 108
           C  AG +    G IKD + +VH   GC  +      ++              E+F    I
Sbjct: 20  CQPAGAQYASIG-IKDCIGIVHGGQGCVMFVRLLISQHLK------------ESFE---I 63

Query: 109 VGTDLTESDVVFGGMNKLKKVIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQAE 168
             + + E   VFG ++++++ +      +P V  I +  TC+T +IGDD+D V ++++  
Sbjct: 64  ASSSVHEDGAVFGALDRVEQAVDVLLMRYPDVKVIPIITTCSTEVIGDDVDGVVRKLEEG 123

Query: 169 LGKD--------VVAFNAPGFAGPTQSKGHHVGNYTIFEKLVGTKEPPKTTDYDINLIGE 220
           L K+        ++  + P F G +   G+ V     F K    K  P      INLI  
Sbjct: 124 LLKEKFPDREVHLIPIHTPSFVG-SMVTGYDVA-VRDFVKAFAKKGKP---SLKINLITG 178

Query: 221 YNIDGDYWVLEKYFEDMGI--NVLSKFT---------------GDATHGELCWMHKAKLS 263
           +   GD   L+    +M +  NVL +                 G  T  +L     A+ +
Sbjct: 179 WVNPGDVKELKHLLAEMRVEANVLFEIESFDSPLMPDKSAVSHGSTTIDDLIDTANAQGT 238

Query: 264 LVRCQRSATYVAKLIEEKYGVPYL----KVDFFGPEYCAENLRAVGKYFGKEIEAEAVIK 319
           +   +      A+ +++ + VP +     +     +   +NL+ +    GK I   ++++
Sbjct: 239 IALNRYEGAKAAEFLQKGFDVPAVIGPTPIGIRNTDTFLQNLKIM---TGKAI-PPSLVR 294

Query: 320 KEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLS--------KPIEQYLGMDVVALSGL 371
           +    I    D     L  KK+ I         L+        KP+   LG +    +  
Sbjct: 295 ERGIAIDALTDLVHMFLADKKVAIYGNPDLVIGLAEFCLDLEMKPMLLLLGDE----NAG 350

Query: 372 FEHEDGYEKMQERAKDGTIIIDDPNTLEMEEVVEK--YQPEIVLGGIKEKYFFHKLGVPS 429
           +E +   + +QER      II + +  E+E+ V+    + +++LG  K ++      +P 
Sbjct: 351 YETDPRIKALQERVDHDMEIITNADLWELEDRVKNKGLELDLILGHSKGRFTAIDNNIPM 410

Query: 430 VMI--HSYENG-----PYIGFEGFVNMARDIYTAIYNPAWKLMEFEEEE 471
           V +   +Y+       P +G+ G   +A     A+ N  +  ME+++ +
Sbjct: 411 VRVGFPTYDRAGLYRHPVVGYAGATWLAE----AMANTLFTDMEYKKNK 455