Pairwise Alignments

Query, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 487 a.a., Nitrogenase molybdenum-iron protein alpha chain (NCBI) from Rhodospirillum rubrum S1H

 Score =  336 bits (861), Expect = 1e-96
 Identities = 179/463 (38%), Positives = 273/463 (58%), Gaps = 14/463 (3%)

Query: 9   DKDIPEREQHIYIKDSKEPKGHCKQRCNTNTIPGSMTERGCAFAGVKGVITGAIKDVLHV 68
           +K   +R++H+    ++     C  + N   IPG MT RGCA+AG KGV+ G +KD++H+
Sbjct: 25  EKAAKKRKKHLGTIVAEGEGSSCGVKSNVKAIPGVMTIRGCAYAGSKGVVWGPVKDMVHI 84

Query: 69  VHSPVGCTAYGNGTTKRYPTRPEMPDGSVFPVENFNLKHIVGTDLTESDVVFGGMNKLKK 128
            H PVGC  Y     + Y T      G V  V++F       +D  E D+VFGG  KL+K
Sbjct: 85  SHGPVGCGQYSWSQRRNYFT------GQV-GVDSFVTMQFT-SDFQEKDIVFGGDKKLEK 136

Query: 129 VIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQAELGKDVVAFNAPGFAGPTQSK 188
           VI E    FP V  I + + C  GLIGDD++AV ++   ++G  ++     GF G +QS 
Sbjct: 137 VIDEIKGLFPLVRGISIQSECPIGLIGDDIEAVARKKAKDVGLPIIPVRCEGFRGVSQSL 196

Query: 189 GHHVGNYTIFEKLVG--TKEPPKTTDYDINLIGEYNIDGDYWVLEKYFEDMGINVLSKFT 246
           GHH+ N  I + +    ++   +TT YD+N+IG+YNI GD W      E+MG+ V+++++
Sbjct: 197 GHHIANDAIRDWVFSRDSESAFETTPYDVNIIGDYNIGGDAWASRILLEEMGLRVIAQWS 256

Query: 247 GDATHGELCWMHKAKLSLVRCQRSATYVAKLIEEKYGVPYLKVDFFGPEYCAENLRAVGK 306
           GDAT  E+    KAKL+L+ C RS  Y+ + +EEK+GVP+++ +FFGP    ++LRA+  
Sbjct: 257 GDATIAEMERAPKAKLNLIHCYRSMNYICRHMEEKHGVPWMEYNFFGPSQIEKSLRAIAA 316

Query: 307 YFGKEIE--AEAVIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLSKPIEQYLGMD 364
            F + I+  AE VI      +   ++ YK++L+GK++ +  GG +  H+    E  LGM 
Sbjct: 317 NFDETIQKKAEEVIAAHRPTVDAVINKYKARLEGKRVMLYVGGLRPRHVMTAYED-LGMQ 375

Query: 365 VVALSGLFEHEDGYEKMQERAKDGTIIIDDPNTLEMEEVVEKYQPEIVLGGIKEKYFFHK 424
           +      F H D Y++  E AK+GT+I DD    E+E  +EK +P++V  GIKEKY   K
Sbjct: 376 ICGAGYEFAHSDDYQRTTEYAKEGTLIYDDLTGYELERFIEKLRPDLVGSGIKEKYAVQK 435

Query: 425 LGVPSVMIHSYE-NGPYIGFEGFVNMARDIYTAIYNPAWKLME 466
           +GVP   +HS++ +GPY G++GF   ARD+  AI NP W L++
Sbjct: 436 MGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINNPVWALLK 478