Pairwise Alignments

Query, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 487 a.a., Nitrogenase (NCBI) from Rhodospirillum rubrum S1H

 Score =  105 bits (261), Expect = 4e-27
 Identities = 108/420 (25%), Positives = 187/420 (44%), Gaps = 47/420 (11%)

Query: 62  IKDVLHVVHSPVGCT---AYGNGTTKRYPTRPEMPDGSVFPVENFNLKHIVGTDLTESDV 118
           I+D + + H+PVGC    A  N   +R   +  M       V N  L   + T LTE D 
Sbjct: 65  IEDAVVINHAPVGCAGDFAQLNRCRRRGQGKRAME------VTNARL---LSTALTEHDT 115

Query: 119 VFGGMNKLKKVIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQAELGKDVVAFNA 178
           +FGG  KL + I +A   +    AI+V A+C +G++G+D+D+V  E +      VVA + 
Sbjct: 116 IFGGAQKLAETIDQAVARY-HPRAIFVTASCASGIVGEDIDSVVTEAEERHAIPVVAIDC 174

Query: 179 PGFAGPTQSKGHHVGNYTIFEKLVG---TKEPPKTTDYDINLIGEYNIDGDYWVLEKYFE 235
            GF     + G  +    +  K+V    TK P         ++      G      +  E
Sbjct: 175 VGFRTQVWATGFDMAYDALLRKIVKPAVTKRP--------EVVNIVCFSGKKAYFSELLE 226

Query: 236 DMGINVLSKFTGDATHGELCWMHKAKLSLVRCQRSATYVAKLIEEKYGVPYLKV-DFFGP 294
            +G+ V +      T  E+  + +A  +   C    T++   +E ++GVP +K    +G 
Sbjct: 227 PLGL-VANPIVQFLTVAEIETLSEAGATAHMCPTLGTWLGAGLERRFGVPEVKAPPPYGL 285

Query: 295 EYCAENLRAVGKYFGKEIEAEAVIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLS 354
                 LRA+    G+    EA I  E   I P+L   +++L G+  +++AG  +  H  
Sbjct: 286 AGTDHWLRALAALTGRSDRVEAYIAAERAAIAPDLADLRAQLAGRTAFVAAGSAQG-HSF 344

Query: 355 KPIEQYLGMDVVALSGLFEHED-----GYEK---MQERAKDGTII---IDDPNTLEMEEV 403
             + + LG+DV+   G   H D     G+++   +    +D   +   + +  + E+  +
Sbjct: 345 MTVLRDLGIDVI--GGCALHHDPVLDHGHQEEDTLAHATRDKAEVPYGVCNKQSFELINL 402

Query: 404 VEKYQPEIVLGGIKEK---YFFHKLGVPSVMIHSYENGPYIGFEGFVNMARDIYTAIYNP 460
           V K +P+I+L  I+      +  KLG+P++ +     G  IG+ G +   R I   I NP
Sbjct: 403 VGKLKPDILL--IRHPGLVVWGAKLGIPTLYVEDEHAG--IGYRGLIRYGRKIADWIANP 458