Pairwise Alignments

Query, 477 a.a., nitrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 519 a.a., nitrogenase molybdenum-iron protein subunit beta from Rhodopseudomonas palustris CGA009

 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 95/457 (20%), Positives = 166/457 (36%), Gaps = 76/457 (16%)

Query: 48  GCAFAGVKGVITGAIKDVLHVVHSPVGCTAYGNGTTKRYPTRPEMPDGSVFPVENFNLKH 107
           G  FA V        +  L  VH   GC AY      R+   P                 
Sbjct: 74  GAVFAAV------GFEKTLPFVHGSQGCVAYYRSHFTRHFKEPTS--------------- 112

Query: 108 IVGTDLTESDVVFGGMNKLKKVIREASKEFPFVNAIYVYATCTTGLIGDDLDAVCKEMQA 167
            V + +TE   VFGG+N +   +  A   +     I V  TC   +IGDDL+A  K  + 
Sbjct: 113 CVSSSMTEDAAVFGGLNNMIDGLANAYALYK-PKMIAVSTTCMAEVIGDDLNAFIKNAK- 170

Query: 168 ELGK-----DVVAFNAPGFAGPTQSKGHHVGNYTIFEKLV--------GTKEP-PKTTDY 213
           E G      DV   + P F G      H  G     + +V        GT E   +  + 
Sbjct: 171 EKGSVPQEFDVTYAHTPAFVG-----SHITGYDNTMKGIVEHFWDGKSGTVEKLERKPNE 225

Query: 214 DINLIGEYN--IDGDYWVLEKYFEDMGINVL-----SKFTGDATHGELCWMHKAKLSLVR 266
            IN +G ++    G+   +++ FE MG++       S        GE   M+    +L +
Sbjct: 226 SINFLGGFDGYTVGNIREIKRIFELMGVDYTIFGDNSDVWDTPADGEF-RMYDGGTTLEQ 284

Query: 267 CQRSATYVAKLIEEKYGV--PYLKVDFFGPEYCAEN-----------LRAVGKYFGKEIE 313
              +    A +  +++        +   G E  A N           L+AV +  GK I 
Sbjct: 285 AANAVHAKATISMQEFCTEKTLATIADHGQEVVAFNHPVGIAGTDRFLQAVSRITGKAI- 343

Query: 314 AEAVIKKEMEKIQPELDFYKSKLQGKKIWISAGGPKSWHLSKPIEQYLG--MDVVALSGL 371
               + KE  ++   +    + + GKK  I       + L++ I +  G  + ++A +G 
Sbjct: 344 -PEALTKERGRLVDAIGDSSAHIHGKKFAIYGDPDLCYGLAEFILELGGEPVHILATNGN 402

Query: 372 FEHEDGYEKMQERAK--DGTIIIDDPNTLEMEEVVEKYQPEIVLGGIKEKYFFHKLGVPS 429
              E   + + + +    G  +    +   +  ++     + ++G    KY     G P 
Sbjct: 403 KAWEAKVQALLDSSPFGAGCKVYAGKDLWHLRSLLFTEPVDFMIGNTYGKYLERDTGTPL 462

Query: 430 VMI-------HSYENGPYIGFEGFVNMARDIYTAIYN 459
           + +       H +   P  G++G +N+   I   I++
Sbjct: 463 IRLGFPVFDRHHHHRSPVWGYQGSMNVLVKILDKIFD 499