Pairwise Alignments

Query, 275 a.a., nitrogenase iron protein from Methanococcus maripaludis S2

Subject, 289 a.a., nitrogenase iron protein NifH from Rhodopseudomonas palustris CGA009

 Score =  241 bits (614), Expect = 2e-68
 Identities = 122/271 (45%), Positives = 181/271 (66%), Gaps = 4/271 (1%)

Query: 2   VRKIAIYGKGGIGKSTTTQNTVAAMAHFHDKKVFIHGCDPKADSTRLILHGKQQVTMMDT 61
           +++IAIYGKGGIGKSTTT N  AA+A     KV   G DPKADST  +  G+   +++D 
Sbjct: 5   LKQIAIYGKGGIGKSTTTSNISAALAEA-GYKVMQFGADPKADSTNTLRGGEYIPSVLDL 63

Query: 62  LREKGEDECTPDKVIEVGFGGVKCVESGGPEPGVGCAGRGVITAITLMEQHGVYED-DLD 120
           L E+   +    + I  GFGG+ CVE+GGP+PGVGCAGRG+ITA+ L++Q  V+E+ DLD
Sbjct: 64  LAERRRVDAY--EAIFQGFGGIYCVEAGGPQPGVGCAGRGIITAVELLKQQRVFEELDLD 121

Query: 121 FVFFDVLGDVVCGGFAMPVRDGKADEIYVVASGEMMALYAANNICKGMVKYAEQSGVRLG 180
            V +DVLGDVVCGGFA+PVR+G A+ ++ V+S + MA+YAANN+ +G+ +++   G  LG
Sbjct: 122 IVIYDVLGDVVCGGFAVPVREGIAEHVFTVSSSDFMAIYAANNLFRGIERFSNSGGALLG 181

Query: 181 GIICNSRNVDGELDLLQEFCDKIGTQLIHFVPRDNIVQKAEFQKKAVVDYDDTCNQALEY 240
           GII NS N D + +++ +F     T ++ +VPR   V +AE   +  ++      QA  Y
Sbjct: 182 GIIANSINTDFQREVIDDFAAHTDTPIVQYVPRSLTVTQAELSGRTTIEAAPQSAQADVY 241

Query: 241 KELARKIIENENLVIPTPMTMDELEELTSKY 271
           ++LAR+I E+    +PTP+   +L E ++++
Sbjct: 242 RQLARRIAEHTESKVPTPLNPQQLREWSARW 272