Pairwise Alignments

Query, 417 a.a., APC family permease from Methanococcus maripaludis S2

Subject, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 89/357 (24%), Positives = 157/357 (43%), Gaps = 43/357 (12%)

Query: 2   SSKKLGPYTLSGLIVGPILGSGIVIIPPIVYDILKDYSIFAWVIMMTIGGVFAYFASKLC 61
           ++KK+G    +G++ G ++GSGI ++P  +  +    SI++W+I +      A+  ++L 
Sbjct: 4   NAKKIGLIACTGVVAGNMMGSGIALLPSTLASV-GSISIYSWLICIVGALSLAFVFARLA 62

Query: 62  LKFPGDSG-------LTEVVGHSFGKSYKNLNAYYLLIAMAMAPLVVIMVAGEYLSVLF- 113
            K P + G       ++ V G   G  Y + N         +  L + +    YLSV F 
Sbjct: 63  TKNPQEGGPIAYAGEVSPVFGFQTGVLYYHANW--------IGNLAIAITGVSYLSVFFP 114

Query: 114 -------SNYAFGAEFYSAVLM-LIGGVILSRNISSVGKISMLISTVISTILVVGGLFTI 165
                  +  A  A  +   L+ L+GG  +SR + ++G + +LI  V+ T L     F  
Sbjct: 115 VLNNPIPAGLATIASVWLFTLVNLLGGSWVSR-LCTIGLVLILIP-VVGTALFGWTHFDS 172

Query: 166 LFYRKDALFTGTGISTIDVGYSFLIMFWSIIGWEILGNYSLEVENPEKTIPKAALVSVIA 225
             Y ++      G     V  + LI  WS +G E     S  VENP++T+P A ++    
Sbjct: 173 ALYSQN-WNVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPKRTVPLATMLGTGL 231

Query: 226 MSIVYLI----VSGALQVLDIGKLGLIDPISGISLILYPLFGQYSSIILSLTITGLC--- 278
             ++Y++    +SG     ++   G     +  +L    LFG +++  +S      C   
Sbjct: 232 AGLIYVLSTQMISGMFPASEVAASG-----APFALATTALFGSWTAPFVSAFTALACFTS 286

Query: 279 LCSFLMLIGGASRLVYAQAKDGVFPKIFKYRSNTNAPLSAVLLMVFANFLTLFAVYF 335
           L S++ML+G A +     A DG FPK+F        P   +L+      L +  + F
Sbjct: 287 LGSWMMLVGEAGK---RAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMF 340