Pairwise Alignments

Query, 417 a.a., APC family permease from Methanococcus maripaludis S2

Subject, 419 a.a., inner membrane protein YjeH (RefSeq) from Shewanella loihica PV-4

 Score = 74.7 bits (182), Expect = 5e-18
 Identities = 72/403 (17%), Positives = 175/403 (43%), Gaps = 23/403 (5%)

Query: 6   LGPYTLSGLIVGPILGSGIVIIPPIVYDILKDYSIFAWVIM-MTIGGVFAYFASKLCLKF 64
           +G +  +GL+   +LG+G+ I+P +        ++ AW+++ + I  V   FA +L   F
Sbjct: 8   IGRWQGAGLMATTLLGTGVFILPEMTIATAGSGALLAWILLTLAIIPVTLVFA-RLAGVF 66

Query: 65  PGDSGLTEVVGHSFGKSYKNLNAYYLLIAMAMAPLVVIMVAGEYLSVLFSNYAFGAEFYS 124
           P  +G    V  +FG++         L+ + +     I++  ++++ L     +      
Sbjct: 67  PHAAGPAYFVEKAFGRTAGRTTGLIFLLVVPIGTPAAILMTFQFINALVPLVGWQQLMTE 126

Query: 125 AVLMLIGGVILSRNISSVGKISMLISTVISTILVVGGLFTILFYRKDALFTGTGISTIDV 184
             L+L+   +  + I    K+   ++  I +++V+  LF     +   L      +  D+
Sbjct: 127 LALLLLLLALNLKGIQVSAKLQFALTLAIVSVVVI--LFGAGGAKLGDLELAAPQAGSDM 184

Query: 185 GYSFL---IMFWSIIGWEILGNYSLEVENPEKTIPKAALVSVIAMSIVYLIVSGALQVLD 241
           G       I FWS +G E + + + + + P+K +  A ++  I + +VY+  +  L  + 
Sbjct: 185 GLVMAAAGIAFWSFLGIEAMTHLANDFKRPDKDMLPAMIIGTILVGLVYVTCTLLLLFVP 244

Query: 242 IGKLGLIDPISGISLI--LYPLFGQYSSIILSLTITGLCLCSFLMLIGGASRLVYAQAKD 299
            G+        G++++     L G Y + ++ +      L +  +     +RL+++ +++
Sbjct: 245 KGE--------GLAMVTAFDHLLGGYGAQVIGILGIAGGLSTVNVYTASVARLIWSFSRE 296

Query: 300 GVFPKIFKYRSNTNAPLSAVLLMVFANFLTLFAVYFNLISFNEIIAAVNAFLITNIIMAA 359
           GV P+ F   +    P+ A++ ++      +   Y        +IA  N   +   +++ 
Sbjct: 297 GVLPRYFDKLNQHRVPVRALVAVLLTMATVICLTYLLGQELEHLIAWTNGVFVLIYLVSM 356

Query: 360 VASIKVFEN------VMEKGFAVFLLVSFLLMFLFSSKMVILI 396
           +A+ ++         +M   F + + V+     L++  +V ++
Sbjct: 357 LAAARLLSKRYLPLVIMGVAFCLAMAVALGANMLYALMLVSVL 399