Pairwise Alignments

Query, 417 a.a., APC family permease from Methanococcus maripaludis S2

Subject, 426 a.a., inner membrane protein YjeH (RefSeq) from Shewanella oneidensis MR-1

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 79/372 (21%), Positives = 166/372 (44%), Gaps = 29/372 (7%)

Query: 6   LGPYTLSGLIVGPILGSGIVIIPPIVYDILKDYSIFAWVIMMTIGGVFAYFASKLCLKFP 65
           +G +  +GL+   +LG+G+ I+P +        ++ AW ++       A    +L   FP
Sbjct: 12  IGRWQGAGLMATTLLGTGVFILPQMTIAKAHAGALIAWSLLTLAIIPVALIFGRLASVFP 71

Query: 66  GDSGLTEVVGHSFGKSY-KNLNAYYLLIAMAMAPLVVIMVAGEYLSVLFSNYAFGAEFYS 124
             +G    V  +FG++  + +   +LL+    AP  ++M   ++++ L      G    S
Sbjct: 72  HAAGPAYFVEKAFGRTAGRTIGLIFLLVVPMGAPAAILMTF-QFVNALIP--LDGWFKVS 128

Query: 125 AVLMLIGGVIL--SRNISSVGKISMLISTVISTILVVGGLFTILFYRKDALFTGTGISTI 182
           A +++I G+ L   R I    K+   ++  I  I+VV  LF     +   L +     T 
Sbjct: 129 AEVLVIFGLFLLNLRGIQVSAKLQFGLTLCIVAIVVV--LFGASSLQPGHLTSLASYGTP 186

Query: 183 DVGYSFL---IMFWSIIGWEILGNYSLEVENPEKTIPKAALVSVIAMSIVYLIVSGALQV 239
           ++    +   I FWS +G E + + + +   P++ +  A ++  + + I+Y+  +  L +
Sbjct: 187 EISTMMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGIIYVACTLILLL 246

Query: 240 L----DIGKLGLIDPISGISLILYPLFGQYSSIILSLTITGLCLCSFLMLIGGASRLVYA 295
           +     +  +G+ D           L G Y + ++ +      L +  +    A+RLV++
Sbjct: 247 VPTDNSVAMIGVFD----------ALLGGYGAQVIGVLGIASGLATVNVYAASAARLVWS 296

Query: 296 QAKDGVFPKIFKYRSNTNAPLSAV--LLMVFANFLTLFAVYFNLISFNEIIAAVNAFLIT 353
            + +G+ P+ F  ++    P+ A+  LL V A+ + L   +        +IA  N   + 
Sbjct: 297 FSCEGILPRCFAVKNRHGVPIRALGALLSVMASVIVL--THITGQELEHLIAWSNGVFVV 354

Query: 354 NIIMAAVASIKV 365
             +MA +A+ K+
Sbjct: 355 IYLMAMLAAAKL 366