Pairwise Alignments

Query, 417 a.a., APC family permease from Methanococcus maripaludis S2

Subject, 439 a.a., putrescine-ornithine antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 99/440 (22%), Positives = 193/440 (43%), Gaps = 43/440 (9%)

Query: 2   SSKKLGPYTLSGLIVGPILGSGIVIIPPIVYDILKDYSIFAWVIMMTIGGVFAYFASKLC 61
           S  K+G   L+ + +  ++GSGI+++P  +  +    S+ +W++        A+  +K  
Sbjct: 4   SENKIGVVQLTIITIVNMMGSGIIMLPTQLAQV-GTISVLSWLVTAAGSTALAFAFAKCG 62

Query: 62  LKFPGDSGLTEVVGHSFGKSYKNLNAYYLLIAMAMAPLVVIMVAGEYLSVLFSN------ 115
           +      G+     ++FG+S   +  Y   +++ +A + + + A  Y +VL         
Sbjct: 63  MFSKKSGGMGGYAEYAFGRSGNFMANYTYAVSLLIANVAIAISAVGYAAVLLEVNLSPMA 122

Query: 116 --YAFGAEFYSAVLMLIGGVILSRNISSVGKISMLISTVISTILVVGGLFTILFYR---- 169
              A     + A +   GG  ++  +SSV  +  +I  VI   L+    F I  Y+    
Sbjct: 123 ICLATIGVLWLATVANFGGARITGRVSSV-TVWGIILPVIGVSLIGWFWFDIDLYKGAWN 181

Query: 170 -KDALFTGTGISTIDVGYSFLIMFWSIIGWEILGNYSLEVENPEKTIPKAALVSVIAMSI 228
             D  F         +G S  +  W+ +G E     S  V+NPEK +P A +   +  ++
Sbjct: 182 PHDMPFFKA------LGGSIAMTLWAFLGLESACANSEAVDNPEKNVPIAVMGGTLGAAL 235

Query: 229 VYLIVSGALQ-VLDIGKLGLIDPISGISL--ILYPLFGQYSSIILSLTITGLCLCSFLML 285
           +Y++ +  +  ++   +L   +   G++   +  P+ G+   I+++  I   C  S L  
Sbjct: 236 IYIVSTNVIAGIVPNAELASSNAPFGLAFAQMFNPVVGK---IVMACAIIS-CTGSLLGW 291

Query: 286 IGGASRLVYAQAKDGVFPKIFKYRSNTNAPLSAVLLMV-FANFLTLFAVYFNLISFNEII 344
               +++  A A +G FPK+F   S  +AP+  + ++V     L+L  +  +L    +  
Sbjct: 292 QFTIAQVFKASADEGFFPKVFAKVSKADAPIWGMTIIVSIQTLLSLMTISPSL--SKQFE 349

Query: 345 AAVNAFLITNII-----MAAVA----SIKVFEN---VMEKGFAVFLLVSFLLMFLFSSKM 392
           A VN  ++TNI+     MAA+      +KV  N   V      +  L SF  ++      
Sbjct: 350 ALVNLAVVTNIVPYILSMAALGVMQKQLKVPANKARVANVIAVIGALYSFYALYSSGETA 409

Query: 393 VILIILAMLFGTVVYTLKNN 412
           V+L  +A  FG  +Y + +N
Sbjct: 410 VMLGAIATFFGWTIYGVISN 429