Pairwise Alignments

Query, 417 a.a., APC family permease from Methanococcus maripaludis S2

Subject, 422 a.a., inner membrane protein YjeH (RefSeq) from Shewanella sp. ANA-3

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 75/375 (20%), Positives = 167/375 (44%), Gaps = 29/375 (7%)

Query: 3   SKKLGPYTLSGLIVGPILGSGIVIIPPIVYDILKDYSIFAWVIMMTIGGVFAYFASKLCL 62
           S  +G +  +GL+   +LG+G+ I+P +  D  +  ++ AW ++       A    +L  
Sbjct: 5   SGTIGRWQGAGLMATTLLGTGVFILPQMTIDKAQAGALIAWSLLTLAIIPVALIFGRLAS 64

Query: 63  KFPGDSGLTEVVGHSFGKSY-KNLNAYYLLIAMAMAPLVVIMVAGEYLSVLFSNYAF--- 118
            FP  +G    V  +FG++  + +   +LL+    AP  ++M   ++++ L     +   
Sbjct: 65  VFPHAAGPAYFVEKAFGRTAGRTIGLIFLLVVPMGAPAAILMTF-QFVNALIPLDGWPKV 123

Query: 119 GAEFYSAVLMLIGGVILS-RNISSVGKISMLISTVISTILVVGGLFTILFYRKDALFTGT 177
           GAE    VL++ G  +L+ R I    K+   ++  I  I+V+  LF     +   L +  
Sbjct: 124 GAE----VLVIFGLFLLNLRGIQVSAKLQFGLTLCIVAIVVL--LFGASSVQPGHLTSLA 177

Query: 178 GISTIDVGYSFL---IMFWSIIGWEILGNYSLEVENPEKTIPKAALVSVIAMSIVYLIVS 234
              T ++    +   I FWS +G E + + + +   P++ +  A ++  + + I+Y+  +
Sbjct: 178 SYGTPEIPTIMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGIIYVACT 237

Query: 235 GALQVL----DIGKLGLIDPISGISLILYPLFGQYSSIILSLTITGLCLCSFLMLIGGAS 290
             L ++     +  +G+ D           L G Y + ++ +      L +  +    A+
Sbjct: 238 LILLLVPTDKSVAMIGVFD----------ALLGGYGAQVIGVLGIASGLATVNVYAASAA 287

Query: 291 RLVYAQAKDGVFPKIFKYRSNTNAPLSAVLLMVFANFLTLFAVYFNLISFNEIIAAVNAF 350
           RL+++ + +G+ P+ F  ++    P+ A+  ++      +   +        +IA  N  
Sbjct: 288 RLIWSFSNEGILPRCFAVKNRHGVPIRALAALLSVMACVIVLTHTTGQELEHLIAWSNGV 347

Query: 351 LITNIIMAAVASIKV 365
            +   +MA +A+ K+
Sbjct: 348 FVVIYLMAMLAAAKL 362