Pairwise Alignments

Query, 201 a.a., ribonuclease H family protein from Methanococcus maripaludis S2

Subject, 254 a.a., ribonuclease H (RefSeq) from Shewanella loihica PV-4

 Score = 55.5 bits (132), Expect = 8e-13
 Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 40/229 (17%)

Query: 2   SKIYAVRKGRKMGLFNTWAECENQVKGFSGAEFKSFKSKIDAEDYLNLKSGQNQNNIKSD 61
           SK Y V  GR+ G+F +W + +  V GF+GA +KSFK++ +AE       GQ+    K  
Sbjct: 3   SKYYVVWAGRETGIFTSWPQTKALVDGFAGARYKSFKTQAEAEAAFGAGKGQSAAGSKGT 62

Query: 62  EFK-----------------KDVMHAWVDGSFNLKNKEYGAGALILFNGIEKEI------ 98
             K                    +  + DG       E G+G  +   G   E+      
Sbjct: 63  SSKAKPAASKPSKPAVSEQPDSDIDIYTDGGCEPNPGEAGSGLALYKKGELAELWYGLYN 122

Query: 99  -KAKGNDTELSKMRNVAGEILASELAMEYAVSKNVKNLVIYHDYIGIEKWCTGEWKTN-- 155
            K   N  EL+ +      +L +   +E  +  ++ +   Y     I  W  G WK N  
Sbjct: 123 PKGTNNTAELNALHQA---LLMARQYLEQGLRVHIHSDSQYAIKC-ISLWAYG-WKANGW 177

Query: 156 --KSG------TIEYIEKCINYLKKLNIEFVKVKAHSGDKNNEIADKLA 196
             K+G       I+   +  + LK   ++   V AH G + NE+AD+++
Sbjct: 178 RRKTGEIANLSVIQEAHELYDSLKD-KLKLSHVAAHVGIEGNELADRMS 225