Pairwise Alignments

Query, 654 a.a., CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein from Methanococcus maripaludis S2

Subject, 166 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 43.9 bits (102), Expect = 5e-09
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 577 VTIDENVCGACGICVQQCPYGAPRFVEKDGKVVAEVLSALCKGCGTCAAGCPSGALEQSH 636
           VT DE  C  C +C   CP GA RF E+   +   +    C  CG C+  C + A++ S+
Sbjct: 35  VTFDETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKLSN 94



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 14/66 (21%)

Query: 243 EEKCTGCGSCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTIDKESCIDCGLCAKV 302
           E  C GC  CE VCP         G  +R   ++  P+ +  ++ I   +C++CGLC+  
Sbjct: 39  ETACVGCKMCEHVCP---------GGAIR---FEERPEGL--RFMIWHNTCVNCGLCSHY 84

Query: 303 CGPQAI 308
           C  +AI
Sbjct: 85  CLTKAI 90



 Score = 37.4 bits (85), Expect = 5e-07
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 277 PFPQAVPAKYTIDKESCIDCGLCAKVCGPQAIDYGQKPE 315
           P P A   K T D+ +C+ C +C  VC   AI + ++PE
Sbjct: 26  PTPAAYRGKVTFDETACVGCKMCEHVCPGGAIRFEERPE 64



 Score = 23.9 bits (50), Expect = 0.006
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 569 EVQVEPIVVTIDENVCGACGICVQQCPYGAPRF--------VEKDGKVVAE---VLSALC 617
           E + E +   I  N C  CG+C   C   A +         ++ D   + +   V  A C
Sbjct: 60  EERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKLSNDWHLSHLQADKYRLTDQALVAYAAC 119

Query: 618 KGCGT 622
            GCGT
Sbjct: 120 SGCGT 124