Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056

 Score = 65.9 bits (159), Expect = 8e-16
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 116 EPAKRNITLP--KEPIAVTEDCVGCGVCISECPVGALSI-EGEKAVVD--KDSCIYCSIC 170
           +P +  + LP    P A T++C  CG C++ C    +   +G    V+   D C +C  C
Sbjct: 19  QPNQSQVRLPWLARPDAFTDECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQC 78

Query: 171 AQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNEMVA----- 225
           AQ+CP   +FVA  ++P + K  +     +   + C  C D CP + I     +      
Sbjct: 79  AQSCP-EPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASP 137

Query: 226 -VPPKGCPACGLCKAACPVDAI 246
            V  + C  CG C + CP +A+
Sbjct: 138 QVNSEQCSGCGACVSVCPSNAM 159



 Score = 55.1 bits (131), Expect = 1e-12
 Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 25/134 (18%)

Query: 32  CQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNNLKIENDK-- 89
           C  CG CV  C         IE        + +   +C  C +C + CP  L +   +  
Sbjct: 40  CTRCGKCVTACETHI-----IEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAP 94

Query: 90  ------LKGFC-----VGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGC 138
                 +   C     V C  C DACP+  +            I     P   +E C GC
Sbjct: 95  WQAKVHITHHCLAQQQVECRSCQDACPEEAIHFA-------LQIGRTASPQVNSEQCSGC 147

Query: 139 GVCISECPVGALSI 152
           G C+S CP  A+++
Sbjct: 148 GACVSVCPSNAMTV 161



 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 21/132 (15%)

Query: 65  FPTKCDLCGECVKVCPNNLKIENDKLKGF---------CVGCMKCVDACPDS-YVGMEGV 114
           F  +C  CG+CV  C  ++  + D   GF         C  C +C  +CP+  +V     
Sbjct: 36  FTDECTRCGKCVTACETHIIEKGD--GGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEA 93

Query: 115 VEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE---GEKA--VVDKDSCIYCSI 169
              AK +IT       + +  V C  C   CP  A+      G  A   V+ + C  C  
Sbjct: 94  PWQAKVHIT----HHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGA 149

Query: 170 CAQTCPWNAIFV 181
           C   CP NA+ V
Sbjct: 150 CVSVCPSNAMTV 161



 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 24/134 (17%)

Query: 231 CPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNP 290
           C  CG C  AC    IE   +     P  +  I    ++C +C  CA  CP       + 
Sbjct: 40  CTRCGKCVTACETHIIE---KGDGGFPTVNFSI----DECTFCYQCAQSCPEPLFVAQS- 91

Query: 291 KGLEMPSRKKTEKANEF--KMCIRCGACVQSCPNDA----LRIGKIIHNGKEYERIEFSP 344
              E P + K    +    +  + C +C  +CP +A    L+IG+        E+     
Sbjct: 92  ---EAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNSEQ----- 143

Query: 345 NLCDSCGKCIETCP 358
             C  CG C+  CP
Sbjct: 144 --CSGCGACVSVCP 155



 Score = 42.7 bits (99), Expect = 7e-09
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 15/134 (11%)

Query: 200 SDLCIGCGDCTDKCPRDLIVLNE----MVAVPPKGCPACGLCKAACPVDAIELVVE--YA 253
           +D C  CG C   C   +I   +     V      C  C  C  +CP        E  + 
Sbjct: 37  TDECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQ 96

Query: 254 SPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRC 313
           +   IT   +   + +C  C      CP  AI      G     +  +E+      C  C
Sbjct: 97  AKVHITHHCLAQQQVECRSCQDA---CPEEAIHFALQIGRTASPQVNSEQ------CSGC 147

Query: 314 GACVQSCPNDALRI 327
           GACV  CP++A+ +
Sbjct: 148 GACVSVCPSNAMTV 161



 Score = 40.0 bits (92), Expect = 5e-08
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 18/96 (18%)

Query: 2   IKINTEDCYMCKACENSCP-------TEA---LKLNPFKVCQL-----CGNCVNVCPNDA 46
           +  + ++C  C  C  SCP       +EA    K++    C       C +C + CP +A
Sbjct: 65  VNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEA 124

Query: 47  LNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNN 82
           ++   +++      Q+     +C  CG CV VCP+N
Sbjct: 125 IHF-ALQIGRTASPQVN--SEQCSGCGACVSVCPSN 157



 Score = 37.7 bits (86), Expect = 2e-07
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 18/88 (20%)

Query: 310 CIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLTGKSE 369
           C RCG CV +C    +  G        +  + FS + C  C +C ++CP  +     +SE
Sbjct: 40  CTRCGKCVTACETHIIEKG-----DGGFPTVNFSIDECTFCYQCAQSCPEPL--FVAQSE 92

Query: 370 KPLEG------FC-----VMCLKCIEAC 386
            P +        C     V C  C +AC
Sbjct: 93  APWQAKVHITHHCLAQQQVECRSCQDAC 120



 Score = 36.6 bits (83), Expect = 5e-07
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 11/49 (22%)

Query: 12  CKACENSCPTEALKL--------NP---FKVCQLCGNCVNVCPNDALNL 49
           C++C+++CP EA+          +P    + C  CG CV+VCP++A+ +
Sbjct: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAMTV 161



 Score = 28.1 bits (61), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 3   KINTEDCYMCKACENSCPTEALKLN 27
           ++N+E C  C AC + CP+ A+ ++
Sbjct: 138 QVNSEQCSGCGACVSVCPSNAMTVH 162