Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 188 a.a., NADH:ubiquinone oxidoreductase subunit 6 (chain I) from Sinorhizobium meliloti 1021

 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 164 CIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNE 222
           C+ C +CA+ CP + I V   +  K ++   KF +D+  C+ CG C D CP D I L +
Sbjct: 68  CVACELCARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQ 126



 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 17/87 (19%)

Query: 260 DEGIVWDEEKCAYCGPCAIKCPNNAITVV---NPKGLEMPSRKKTEKANEFKMCIRCGAC 316
           DEG    E KC  C  CA  CP + I VV   + KG   P++ + + A     C+ CG C
Sbjct: 62  DEG----EIKCVACELCARICPCDCIEVVPYEDEKGNRRPAKFEIDTAR----CLFCGLC 113

Query: 317 VQSCPNDALRIGKIIHNGKEYERIEFS 343
             +CP DA+ +      G++YE   FS
Sbjct: 114 EDACPADAIAL------GQQYEFSSFS 134



 Score = 37.0 bits (84), Expect = 5e-07
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 135 CVGCGVCISECPVGALSI---EGEKA-------VVDKDSCIYCSICAQTCPWNAI 179
           CV C +C   CP   + +   E EK         +D   C++C +C   CP +AI
Sbjct: 68  CVACELCARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 122



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 300 KTEKANEFKMCIRCGACVQSCPNDALRIGKIIHN--GKEYERIEFSPNLCDSCGKCIETC 357
           K +   E K C+ C  C + CP D + +         +   + E     C  CG C + C
Sbjct: 59  KRDDEGEIK-CVACELCARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDAC 117

Query: 358 PYDMLKL 364
           P D + L
Sbjct: 118 PADAIAL 124



 Score = 33.9 bits (76), Expect = 4e-06
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 16/57 (28%)

Query: 9   CYMCKACENSCPTEALKLNPFKV----------------CQLCGNCVNVCPNDALNL 49
           C  C+ C   CP + +++ P++                 C  CG C + CP DA+ L
Sbjct: 68  CVACELCARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAIAL 124



 Score = 33.5 bits (75), Expect = 5e-06
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 27/85 (31%)

Query: 68  KCDLCGECVKVCPNNLKIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKE 127
           KC  C  C ++CP                   C++  P  Y   +G   PAK  I     
Sbjct: 67  KCVACELCARICP-----------------CDCIEVVP--YEDEKGNRRPAKFEID---- 103

Query: 128 PIAVTEDCVGCGVCISECPVGALSI 152
               T  C+ CG+C   CP  A+++
Sbjct: 104 ----TARCLFCGLCEDACPADAIAL 124



 Score = 29.6 bits (65), Expect = 7e-05
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 3   KINTEDCYMCKACENSCPTEALKL 26
           +I+T  C  C  CE++CP +A+ L
Sbjct: 101 EIDTARCLFCGLCEDACPADAIAL 124